Analysis of interatomic Contacts of Structural Units in PDB entry:
8SS6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SS6 entry

There are 6 chains in PDB entry 8SS6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	ALA 1034
B	ASN 10	LYS 817
C	ASN 10	ALA 1034
D	ASN 10	LYS 817
E	ALA 2	SER 159
F	ALA 2	SER 159

There are132 helices in PDB entry 8SS6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	36	Right-handed alpha
Helix 2	AA2	A	54	68	Right-handed alpha
Helix 3	AA3	A	81	92	Right-handed alpha
Helix 4	AA4	A	117	128	Right-handed alpha
Helix 5	AA5	A	143	157	Right-handed alpha
Helix 6	AA6	A	172	185	Right-handed alpha
Helix 7	AA7	A	197	212	Right-handed alpha
Helix 8	AA8	A	226	230	Right-handed 310
Helix 9	AA9	A	231	235	Right-handed 310
Helix 10	AB1	A	252	265	Right-handed alpha
Helix 11	AB2	A	279	302	Right-handed alpha
Helix 12	AB3	A	325	334	Right-handed alpha
Helix 13	AB4	A	416	419	Right-handed 310
Helix 14	AB5	A	423	437	Right-handed alpha
Helix 15	AB6	A	464	469	Right-handed alpha
Helix 16	AB7	A	482	487	Right-handed alpha
Helix 17	AB8	A	515	519	Right-handed 310
Helix 18	AB9	A	522	546	Right-handed alpha
Helix 19	AC1	A	572	585	Right-handed alpha
Helix 20	AC2	A	595	630	Right-handed alpha
Helix 21	AC3	A	636	642	Right-handed alpha
Helix 22	AC4	A	653	661	Right-handed alpha
Helix 23	AC5	A	664	676	Right-handed alpha
Helix 24	AC6	A	685	695	Right-handed alpha
Helix 25	AC7	A	706	713	Right-handed alpha
Helix 26	AC8	A	742	756	Right-handed alpha
Helix 27	AC9	A	757	768	Right-handed alpha
Helix 28	AD1	A	792	820	Right-handed alpha
Helix 29	AD2	A	834	857	Right-handed alpha
Helix 30	AD3	A	920	925	Right-handed alpha
Helix 31	AD4	A	930	952	Right-handed alpha
Helix 32	AD5	A	956	988	Right-handed alpha
Helix 33	AD6	A	1004	1033	Right-handed alpha
Helix 34	AD7	B	22	36	Right-handed alpha
Helix 35	AD8	B	54	68	Right-handed alpha
Helix 36	AD9	B	81	92	Right-handed alpha
Helix 37	AE1	B	117	129	Right-handed alpha
Helix 38	AE2	B	143	156	Right-handed alpha
Helix 39	AE3	B	172	187	Right-handed alpha
Helix 40	AE4	B	197	211	Right-handed alpha
Helix 41	AE5	B	226	230	Right-handed 310
Helix 42	AE6	B	252	264	Right-handed alpha
Helix 43	AE7	B	279	302	Right-handed alpha
Helix 44	AE8	B	324	335	Right-handed alpha
Helix 45	AE9	B	423	437	Right-handed alpha
Helix 46	AF1	B	461	469	Right-handed alpha
Helix 47	AF2	B	482	487	Right-handed alpha
Helix 48	AF3	B	515	519	Right-handed 310
Helix 49	AF4	B	522	546	Right-handed alpha
Helix 50	AF5	B	572	585	Right-handed alpha
Helix 51	AF6	B	595	626	Right-handed alpha
Helix 52	AF7	B	635	641	Right-handed alpha
Helix 53	AF8	B	653	661	Right-handed alpha
Helix 54	AF9	B	668	675	Right-handed alpha
Helix 55	AG1	B	685	695	Right-handed alpha
Helix 56	AG2	B	707	713	Right-handed alpha
Helix 57	AG3	B	742	756	Right-handed alpha
Helix 58	AG4	B	757	768	Right-handed alpha
Helix 59	AG5	B	788	791	Right-handed 310
Helix 60	AG6	B	792	817	Right-handed alpha
Helix 61	AG7	C	22	36	Right-handed alpha
Helix 62	AG8	C	54	68	Right-handed alpha
Helix 63	AG9	C	81	92	Right-handed alpha
Helix 64	AH1	C	117	128	Right-handed alpha
Helix 65	AH2	C	143	157	Right-handed alpha
Helix 66	AH3	C	172	185	Right-handed alpha
Helix 67	AH4	C	197	212	Right-handed alpha
Helix 68	AH5	C	226	230	Right-handed 310
Helix 69	AH6	C	231	235	Right-handed 310
Helix 70	AH7	C	252	265	Right-handed alpha
Helix 71	AH8	C	279	302	Right-handed alpha
Helix 72	AH9	C	325	334	Right-handed alpha
Helix 73	AI1	C	416	419	Right-handed 310
Helix 74	AI2	C	423	437	Right-handed alpha
Helix 75	AI3	C	464	469	Right-handed alpha
Helix 76	AI4	C	482	487	Right-handed alpha
Helix 77	AI5	C	515	519	Right-handed 310
Helix 78	AI6	C	522	546	Right-handed alpha
Helix 79	AI7	C	572	585	Right-handed alpha
Helix 80	AI8	C	595	630	Right-handed alpha
Helix 81	AI9	C	636	642	Right-handed alpha
Helix 82	AJ1	C	653	661	Right-handed alpha
Helix 83	AJ2	C	664	676	Right-handed alpha
Helix 84	AJ3	C	685	695	Right-handed alpha
Helix 85	AJ4	C	706	713	Right-handed alpha
Helix 86	AJ5	C	742	756	Right-handed alpha
Helix 87	AJ6	C	757	768	Right-handed alpha
Helix 88	AJ7	C	792	820	Right-handed alpha
Helix 89	AJ8	C	834	857	Right-handed alpha
Helix 90	AJ9	C	920	925	Right-handed alpha
Helix 91	AK1	C	930	952	Right-handed alpha
Helix 92	AK2	C	956	988	Right-handed alpha
Helix 93	AK3	C	1004	1033	Right-handed alpha
Helix 94	AK4	D	22	36	Right-handed alpha
Helix 95	AK5	D	54	68	Right-handed alpha
Helix 96	AK6	D	81	92	Right-handed alpha
Helix 97	AK7	D	117	129	Right-handed alpha
Helix 98	AK8	D	143	156	Right-handed alpha
Helix 99	AK9	D	172	187	Right-handed alpha
Helix 100	AL1	D	197	211	Right-handed alpha
Helix 101	AL2	D	226	230	Right-handed 310
Helix 102	AL3	D	252	264	Right-handed alpha
Helix 103	AL4	D	279	302	Right-handed alpha
Helix 104	AL5	D	324	335	Right-handed alpha
Helix 105	AL6	D	423	437	Right-handed alpha
Helix 106	AL7	D	461	469	Right-handed alpha
Helix 107	AL8	D	482	487	Right-handed alpha
Helix 108	AL9	D	515	519	Right-handed 310
Helix 109	AM1	D	522	546	Right-handed alpha
Helix 110	AM2	D	572	585	Right-handed alpha
Helix 111	AM3	D	595	626	Right-handed alpha
Helix 112	AM4	D	635	641	Right-handed alpha
Helix 113	AM5	D	653	661	Right-handed alpha
Helix 114	AM6	D	668	675	Right-handed alpha
Helix 115	AM7	D	685	695	Right-handed alpha
Helix 116	AM8	D	707	713	Right-handed alpha
Helix 117	AM9	D	742	756	Right-handed alpha
Helix 118	AN1	D	757	768	Right-handed alpha
Helix 119	AN2	D	788	791	Right-handed 310
Helix 120	AN3	D	792	817	Right-handed alpha
Helix 121	AN4	E	4	37	Right-handed alpha
Helix 122	AN5	E	57	66	Right-handed alpha
Helix 123	AN6	E	67	85	Right-handed alpha
Helix 124	AN7	E	87	94	Right-handed alpha
Helix 125	AN8	E	94	107	Right-handed alpha
Helix 126	AN9	E	126	159	Right-handed alpha
Helix 127	AO1	F	4	37	Right-handed alpha
Helix 128	AO2	F	57	66	Right-handed alpha
Helix 129	AO3	F	67	85	Right-handed alpha
Helix 130	AO4	F	87	94	Right-handed alpha
Helix 131	AO5	F	94	107	Right-handed alpha
Helix 132	AO6	F	126	159	Right-handed alpha

There are 46 sheets in PDB entry 8SS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	50	first strand
Strand 2	A	11	19	parallel
Strand 3	A	73	75	parallel
Strand 4	A	96	98	parallel
Strand 5	A	110	112	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	163	164	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	219	222	parallel
Strand 3	A	241	246	parallel
Strand 4	A	357	363	anti-parallel
Strand 5	A	368	370	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	219	222	parallel
Strand 3	A	241	246	parallel
Strand 4	A	357	363	anti-parallel
Strand 5	A	373	375	anti-parallel
Strand 6	A	380	381	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	343	344	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	399	first strand
Strand 2	A	440	444	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	459	461	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	480	first strand
Strand 2	A	730	736	anti-parallel
Strand 3	A	490	491	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	480	first strand
Strand 2	A	730	736	anti-parallel
Strand 3	A	496	498	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	884	first strand
Strand 2	A	862	865	anti-parallel
Strand 3	A	1000	1003	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	869	first strand
Strand 2	A	876	877	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	72	75	parallel
Strand 3	B	95	98	parallel
Strand 4	B	110	112	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	132	137	parallel
Strand 3	B	191	195	parallel
Strand 4	B	219	222	parallel
Strand 5	B	243	246	parallel
Strand 6	B	357	364	anti-parallel
Strand 7	B	367	368	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	132	137	parallel
Strand 3	B	191	195	parallel
Strand 4	B	219	222	parallel
Strand 5	B	243	246	parallel
Strand 6	B	357	364	anti-parallel
Strand 7	B	372	375	anti-parallel
Strand 8	B	380	381	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	353	354	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	399	first strand
Strand 2	B	439	444	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	730	737	anti-parallel
Strand 3	B	489	491	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	730	737	anti-parallel
Strand 3	B	496	498	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	50	first strand
Strand 2	C	11	19	parallel
Strand 3	C	73	75	parallel
Strand 4	C	96	98	parallel
Strand 5	C	110	112	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	163	164	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	194	first strand
Strand 2	C	219	222	parallel
Strand 3	C	241	246	parallel
Strand 4	C	357	363	anti-parallel
Strand 5	C	368	370	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	194	first strand
Strand 2	C	219	222	parallel
Strand 3	C	241	246	parallel
Strand 4	C	357	363	anti-parallel
Strand 5	C	373	375	anti-parallel
Strand 6	C	380	381	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	343	344	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	399	first strand
Strand 2	C	440	444	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	459	461	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	480	first strand
Strand 2	C	730	736	anti-parallel
Strand 3	C	490	491	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	480	first strand
Strand 2	C	730	736	anti-parallel
Strand 3	C	496	498	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	862	865	anti-parallel
Strand 3	C	1000	1003	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	868	869	first strand
Strand 2	C	876	877	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	72	75	parallel
Strand 3	D	95	98	parallel
Strand 4	D	110	112	parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	132	137	parallel
Strand 3	D	191	195	parallel
Strand 4	D	219	222	parallel
Strand 5	D	243	246	parallel
Strand 6	D	357	364	anti-parallel
Strand 7	D	367	368	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	132	137	parallel
Strand 3	D	191	195	parallel
Strand 4	D	219	222	parallel
Strand 5	D	243	246	parallel
Strand 6	D	357	364	anti-parallel
Strand 7	D	372	375	anti-parallel
Strand 8	D	380	381	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	343	344	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	353	354	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	399	first strand
Strand 2	D	439	444	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	730	737	anti-parallel
Strand 3	D	489	491	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	730	737	anti-parallel
Strand 3	D	496	498	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SS6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SS6