Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SSC entry

There is 1 chain in PDB entry 8SSC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37VAL 1184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8SSC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 48Right-handed alpha
Helix 2
AA2
A
56 62Right-handed alpha
Helix 3
AA3
A
78 80Right-handed 310
Helix 4
AA4
A
81 86Right-handed alpha
Helix 5
AA5
A
86 101Right-handed alpha
Helix 6
AA6
A
113 118Right-handed alpha
Helix 7
AA7
A
119 121Right-handed 310
Helix 8
AA8
A
125 145Right-handed alpha
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
A
165 183Right-handed alpha
Helix 11
AB2
A
195 213Right-handed alpha
Helix 12
AB3
A
236 247Right-handed alpha
Helix 13
AB4
A
259 274Right-handed alpha
Helix 14
AB5
A
299 313Right-handed alpha
Helix 15
AB6
A
326 338Right-handed alpha
Helix 16
AB7
A
380 389Right-handed alpha
Helix 17
AB8
A
391 405Right-handed alpha
Helix 18
AB9
A
420 436Right-handed alpha
Helix 19
AC1
A
446 455Right-handed alpha
Helix 20
AC2
A
470 485Right-handed alpha
Helix 21
AC3
A
502 520Right-handed alpha
Helix 22
AC4
A
524 526Right-handed 310
Helix 23
AC5
A
546 562Right-handed alpha
Helix 24
AC6
A
570 576Right-handed 310
Helix 25
AC7
A
579 598Right-handed alpha
Helix 26
AC8
A
616 629Right-handed alpha
Helix 27
AC9
A
636 646Right-handed alpha
Helix 28
AD1
A
663 674Right-handed alpha
Helix 29
AD2
A
679 690Right-handed alpha
Helix 30
AD3
A
693 700Right-handed alpha
Helix 31
AD4
A
700 715Right-handed alpha
Helix 32
AD5
A
719 738Right-handed alpha
Helix 33
AD6
A
762 774Right-handed alpha
Helix 34
AD7
A
787 799Right-handed alpha
Helix 35
AD8
A
811 827Right-handed alpha
Helix 36
AD9
A
840 847Right-handed alpha
Helix 37
AE1
A
859 872Right-handed alpha
Helix 38
AE2
A
921 927Right-handed alpha
Helix 39
AE3
A
930 936Right-handed alpha
Helix 40
AE4
A
949 958Right-handed alpha
Helix 41
AE5
A
958 974Right-handed alpha
Helix 42
AE6
A
1019 1024Right-handed 310
Helix 43
AE7
A
1034 1039Right-handed alpha
Helix 44
AE8
A
1040 1046Right-handed alpha
Helix 45
AE9
A
1061 1073Right-handed alpha
Helix 46
AF1
A
1075 1106Right-handed alpha
Helix 47
AF2
A
1107 1111Right-handed 310
Helix 48
AF3
A
1114 1119Right-handed alpha
Helix 49
AF4
A
1137 1139Right-handed 310
Helix 50
AF5
A
1140 1149Right-handed alpha
Helix 51
AF6
A
1150 1154Right-handed 310
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There are 8 sheets in PDB entry 8SSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
318 319parallel
Strand 3
A
277 281parallel
Strand 4
A
251 255parallel
Strand 5
A
219 223parallel
Strand 6
A
187 193parallel
Strand 7
A
147 152parallel
Strand 8
A
104 106parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
293 295anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
359 361anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
528 531parallel
Strand 3
A
488 492parallel
Strand 4
A
462 466parallel
Strand 5
A
440 442parallel
Strand 6
A
409 412parallel
Strand 7
A
369 372parallel
Strand 8
A
601 604parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 781first strand
Strand 2
A
750 755parallel
Strand 3
A
802 806parallel
Strand 4
A
832 835parallel
Strand 5
A
854 857parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 918first strand
Strand 2
A
979 990anti-parallel
Strand 3
A
993 997anti-parallel
Strand 4
A
1004 1008anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 918first strand
Strand 2
A
979 990anti-parallel
Strand 3
A
1050 1058anti-parallel
Strand 4
A
1168 1174anti-parallel
Strand 5
A
1126 1128anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1163 1164anti-parallel
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