Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SSE entry

There are 3 chains in PDB entry 8SSE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 663	ASP 1185
B	PRO 663	ASP 1185
C	PRO 663	TYR 935

There are138 helices in PDB entry 8SSE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	663	675	Right-handed alpha
Helix 2	AA2	A	679	690	Right-handed alpha
Helix 3	AA3	A	693	699	Right-handed alpha
Helix 4	AA4	A	700	716	Right-handed alpha
Helix 5	AA5	A	719	737	Right-handed alpha
Helix 6	AA6	A	762	774	Right-handed alpha
Helix 7	AA7	A	787	799	Right-handed alpha
Helix 8	AA8	A	809	827	Right-handed alpha
Helix 9	AA9	A	840	847	Right-handed alpha
Helix 10	AB1	A	859	871	Right-handed alpha
Helix 11	AB2	A	921	927	Right-handed alpha
Helix 12	AB3	A	930	936	Right-handed alpha
Helix 13	AB4	A	947	958	Right-handed alpha
Helix 14	AB5	A	958	973	Right-handed alpha
Helix 15	AB6	A	1020	1024	Right-handed 310
Helix 16	AB7	A	1034	1038	Right-handed 310
Helix 17	AB8	A	1040	1046	Right-handed alpha
Helix 18	AB9	A	1061	1074	Right-handed alpha
Helix 19	AC1	A	1075	1106	Right-handed alpha
Helix 20	AC2	A	1115	1120	Right-handed alpha
Helix 21	AC3	A	1137	1139	Right-handed 310
Helix 22	AC4	A	1140	1149	Right-handed alpha
Helix 23	AC5	A	1150	1154	Right-handed 310
Helix 24	AC6	B	664	675	Right-handed alpha
Helix 25	AC7	B	679	690	Right-handed alpha
Helix 26	AC8	B	693	700	Right-handed alpha
Helix 27	AC9	B	700	716	Right-handed alpha
Helix 28	AD1	B	719	737	Right-handed alpha
Helix 29	AD2	B	762	774	Right-handed alpha
Helix 30	AD3	B	787	799	Right-handed alpha
Helix 31	AD4	B	809	827	Right-handed alpha
Helix 32	AD5	B	840	847	Right-handed alpha
Helix 33	AD6	B	859	871	Right-handed alpha
Helix 34	AD7	B	921	927	Right-handed alpha
Helix 35	AD8	B	930	936	Right-handed alpha
Helix 36	AD9	B	947	958	Right-handed alpha
Helix 37	AE1	B	958	973	Right-handed alpha
Helix 38	AE2	B	1020	1024	Right-handed 310
Helix 39	AE3	B	1034	1038	Right-handed 310
Helix 40	AE4	B	1040	1046	Right-handed alpha
Helix 41	AE5	B	1061	1074	Right-handed alpha
Helix 42	AE6	B	1075	1106	Right-handed alpha
Helix 43	AE7	B	1115	1119	Right-handed 310
Helix 44	AE8	B	1137	1139	Right-handed 310
Helix 45	AE9	B	1140	1149	Right-handed alpha
Helix 46	AF1	B	1150	1154	Right-handed 310
Helix 47	AF2	C	664	675	Right-handed alpha
Helix 48	AF3	C	679	690	Right-handed alpha
Helix 49	AF4	C	693	700	Right-handed alpha
Helix 50	AF5	C	700	716	Right-handed alpha
Helix 51	AF6	C	719	737	Right-handed alpha
Helix 52	AF7	C	762	774	Right-handed alpha
Helix 53	AF8	C	787	799	Right-handed alpha
Helix 54	AF9	C	809	827	Right-handed alpha
Helix 55	AG1	C	840	847	Right-handed alpha
Helix 56	AG2	C	859	871	Right-handed alpha
Helix 57	AG3	C	921	927	Right-handed alpha
Helix 58	AG4	C	930	936	Right-handed alpha
Helix 59	AG5	C	947	958	Right-handed alpha
Helix 60	AG6	C	958	973	Right-handed alpha
Helix 61	AG7	C	1020	1024	Right-handed 310
Helix 62	AG8	C	1034	1038	Right-handed 310
Helix 63	AG9	C	1040	1046	Right-handed alpha
Helix 64	AH1	C	1061	1074	Right-handed alpha
Helix 65	AH2	C	1075	1106	Right-handed alpha
Helix 66	AH3	C	1115	1119	Right-handed 310
Helix 67	AH4	C	1137	1139	Right-handed 310
Helix 68	AH5	C	1140	1149	Right-handed alpha
Helix 69	AH6	C	1150	1154	Right-handed 310
Helix 70	AH7	D	664	675	Right-handed alpha
Helix 71	AH8	D	679	691	Right-handed alpha
Helix 72	AH9	D	693	699	Right-handed alpha
Helix 73	AI1	D	700	716	Right-handed alpha
Helix 74	AI2	D	719	737	Right-handed alpha
Helix 75	AI3	D	762	774	Right-handed alpha
Helix 76	AI4	D	787	799	Right-handed alpha
Helix 77	AI5	D	809	827	Right-handed alpha
Helix 78	AI6	D	840	847	Right-handed alpha
Helix 79	AI7	D	859	871	Right-handed alpha
Helix 80	AI8	D	921	927	Right-handed alpha
Helix 81	AI9	D	930	936	Right-handed alpha
Helix 82	AJ1	D	947	958	Right-handed alpha
Helix 83	AJ2	D	958	973	Right-handed alpha
Helix 84	AJ3	D	1020	1024	Right-handed 310
Helix 85	AJ4	D	1034	1038	Right-handed 310
Helix 86	AJ5	D	1040	1046	Right-handed alpha
Helix 87	AJ6	D	1061	1074	Right-handed alpha
Helix 88	AJ7	D	1075	1106	Right-handed alpha
Helix 89	AJ8	D	1115	1119	Right-handed 310
Helix 90	AJ9	D	1137	1139	Right-handed 310
Helix 91	AK1	D	1140	1149	Right-handed alpha
Helix 92	AK2	D	1150	1154	Right-handed 310
Helix 93	AK3	E	664	675	Right-handed alpha
Helix 94	AK4	E	679	690	Right-handed alpha
Helix 95	AK5	E	693	699	Right-handed alpha
Helix 96	AK6	E	700	716	Right-handed alpha
Helix 97	AK7	E	719	738	Right-handed alpha
Helix 98	AK8	E	762	774	Right-handed alpha
Helix 99	AK9	E	787	799	Right-handed alpha
Helix 100	AL1	E	809	827	Right-handed alpha
Helix 101	AL2	E	840	847	Right-handed alpha
Helix 102	AL3	E	859	871	Right-handed alpha
Helix 103	AL4	E	921	927	Right-handed alpha
Helix 104	AL5	E	930	936	Right-handed alpha
Helix 105	AL6	E	947	958	Right-handed alpha
Helix 106	AL7	E	958	973	Right-handed alpha
Helix 107	AL8	E	1020	1024	Right-handed 310
Helix 108	AL9	E	1034	1038	Right-handed 310
Helix 109	AM1	E	1040	1046	Right-handed alpha
Helix 110	AM2	E	1061	1074	Right-handed alpha
Helix 111	AM3	E	1075	1106	Right-handed alpha
Helix 112	AM4	E	1115	1119	Right-handed 310
Helix 113	AM5	E	1137	1139	Right-handed 310
Helix 114	AM6	E	1140	1149	Right-handed alpha
Helix 115	AM7	E	1150	1154	Right-handed 310
Helix 116	AM8	F	664	675	Right-handed alpha
Helix 117	AM9	F	679	691	Right-handed alpha
Helix 118	AN1	F	693	700	Right-handed alpha
Helix 119	AN2	F	700	716	Right-handed alpha
Helix 120	AN3	F	719	737	Right-handed alpha
Helix 121	AN4	F	762	774	Right-handed alpha
Helix 122	AN5	F	787	799	Right-handed alpha
Helix 123	AN6	F	809	827	Right-handed alpha
Helix 124	AN7	F	840	848	Right-handed alpha
Helix 125	AN8	F	859	871	Right-handed alpha
Helix 126	AN9	F	921	927	Right-handed alpha
Helix 127	AO1	F	930	936	Right-handed alpha
Helix 128	AO2	F	947	958	Right-handed alpha
Helix 129	AO3	F	958	973	Right-handed alpha
Helix 130	AO4	F	1020	1024	Right-handed 310
Helix 131	AO5	F	1034	1038	Right-handed 310
Helix 132	AO6	F	1040	1046	Right-handed alpha
Helix 133	AO7	F	1061	1074	Right-handed alpha
Helix 134	AO8	F	1075	1106	Right-handed alpha
Helix 135	AO9	F	1115	1119	Right-handed 310
Helix 136	AP1	F	1137	1139	Right-handed 310
Helix 137	AP2	F	1140	1149	Right-handed alpha
Helix 138	AP3	F	1150	1154	Right-handed 310

There are 24 sheets in PDB entry 8SSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	781	first strand
Strand 2	A	750	755	parallel
Strand 3	A	802	806	parallel
Strand 4	A	832	835	parallel
Strand 5	A	854	856	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	917	first strand
Strand 2	A	979	990	anti-parallel
Strand 3	A	993	997	anti-parallel
Strand 4	A	1004	1009	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	917	first strand
Strand 2	A	979	990	anti-parallel
Strand 3	A	1050	1058	anti-parallel
Strand 4	A	1168	1174	anti-parallel
Strand 5	A	1126	1128	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1156	1157	first strand
Strand 2	A	1163	1164	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	781	first strand
Strand 2	B	750	755	parallel
Strand 3	B	802	806	parallel
Strand 4	B	832	835	parallel
Strand 5	B	854	856	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	917	first strand
Strand 2	B	979	990	anti-parallel
Strand 3	B	993	997	anti-parallel
Strand 4	B	1004	1009	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	917	first strand
Strand 2	B	979	990	anti-parallel
Strand 3	B	1050	1058	anti-parallel
Strand 4	B	1168	1174	anti-parallel
Strand 5	B	1126	1128	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1156	1157	first strand
Strand 2	B	1163	1164	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	781	first strand
Strand 2	C	750	755	parallel
Strand 3	C	802	807	parallel
Strand 4	C	832	836	parallel
Strand 5	C	854	856	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	913	917	first strand
Strand 2	C	979	990	anti-parallel
Strand 3	C	993	997	anti-parallel
Strand 4	C	1004	1009	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	913	917	first strand
Strand 2	C	979	990	anti-parallel
Strand 3	C	1050	1058	anti-parallel
Strand 4	C	1168	1174	anti-parallel
Strand 5	C	1126	1128	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1156	1157	first strand
Strand 2	C	1163	1164	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	778	781	first strand
Strand 2	D	750	755	parallel
Strand 3	D	802	806	parallel
Strand 4	D	832	835	parallel
Strand 5	D	854	856	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	913	917	first strand
Strand 2	D	979	990	anti-parallel
Strand 3	D	993	997	anti-parallel
Strand 4	D	1004	1009	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	913	917	first strand
Strand 2	D	979	990	anti-parallel
Strand 3	D	1050	1058	anti-parallel
Strand 4	D	1168	1174	anti-parallel
Strand 5	D	1126	1128	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1156	1157	first strand
Strand 2	D	1163	1164	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	778	781	first strand
Strand 2	E	750	755	parallel
Strand 3	E	802	806	parallel
Strand 4	E	832	835	parallel
Strand 5	E	854	856	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	913	918	first strand
Strand 2	E	979	990	anti-parallel
Strand 3	E	993	997	anti-parallel
Strand 4	E	1004	1009	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	913	918	first strand
Strand 2	E	979	990	anti-parallel
Strand 3	E	1050	1058	anti-parallel
Strand 4	E	1168	1174	anti-parallel
Strand 5	E	1126	1128	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1156	1157	first strand
Strand 2	E	1163	1164	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	778	781	first strand
Strand 2	F	750	755	parallel
Strand 3	F	802	807	parallel
Strand 4	F	832	836	parallel
Strand 5	F	854	856	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	913	917	first strand
Strand 2	F	979	990	anti-parallel
Strand 3	F	993	997	anti-parallel
Strand 4	F	1004	1009	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	913	917	first strand
Strand 2	F	979	990	anti-parallel
Strand 3	F	1050	1058	anti-parallel
Strand 4	F	1168	1174	anti-parallel
Strand 5	F	1126	1128	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1156	1157	first strand
Strand 2	F	1163	1164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SSE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSE