Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SSF entry

There are 2 chains in PDB entry 8SSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 190
B
 MET 1LYS 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8SSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
13 18Right-handed alpha
Helix 3
AA3
A
23 37Right-handed alpha
Helix 4
AA4
A
46 56Right-handed alpha
Helix 5
AA5
A
60 66Right-handed alpha
Helix 6
AA6
A
83 107Right-handed alpha
Helix 7
AA7
A
126 155Right-handed alpha
Helix 8
AA8
A
162 172Right-handed alpha
Helix 9
AA9
A
178 180Right-handed 310
Helix 10
AB1
A
181 188Right-handed alpha
Helix 11
AB2
B
8 12Right-handed 310
Helix 12
AB3
B
13 18Right-handed alpha
Helix 13
AB4
B
23 37Right-handed alpha
Helix 14
AB5
B
46 56Right-handed alpha
Helix 15
AB6
B
58 60Right-handed 310
Helix 16
AB7
B
61 69Right-handed alpha
Helix 17
AB8
B
83 111Right-handed alpha
Helix 18
AB9
B
125 155Right-handed alpha
Helix 19
AC1
B
162 172Right-handed alpha
Helix 20
AC2
B
178 180Right-handed 310
Helix 21
AC3
B
181 190Right-handed alpha
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There are 3 sheets in PDB entry 8SSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
40 45parallel
Strand 3
A
2 6parallel
Strand 4
A
157 159parallel
Strand 5
A
175 176parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
B
80 82anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
41 45parallel
Strand 3
B
3 6parallel
Strand 4
B
157 159parallel
Strand 5
B
175 176parallel
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