Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SSG entry

There are 7 chains in PDB entry 8SSG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 190
B	MET 1	LYS 191
C	MET 1	LYS 191
D	MET 1	THR 190
E	MET 1	THR 190
F	MET 1	LEU 189
G	MET 1	THR 190

There are 76 helices in PDB entry 8SSG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	13	Right-handed alpha
Helix 2	AA2	A	13	18	Right-handed alpha
Helix 3	AA3	A	23	38	Right-handed alpha
Helix 4	AA4	A	46	56	Right-handed alpha
Helix 5	AA5	A	58	60	Right-handed 310
Helix 6	AA6	A	61	68	Right-handed alpha
Helix 7	AA7	A	83	105	Right-handed alpha
Helix 8	AA8	A	124	155	Right-handed alpha
Helix 9	AA9	A	162	172	Right-handed alpha
Helix 10	AB1	A	178	180	Right-handed 310
Helix 11	AB2	A	181	188	Right-handed alpha
Helix 12	AB3	B	8	11	Right-handed 310
Helix 13	AB4	B	13	18	Right-handed alpha
Helix 14	AB5	B	23	37	Right-handed alpha
Helix 15	AB6	B	46	56	Right-handed alpha
Helix 16	AB7	B	58	60	Right-handed 310
Helix 17	AB8	B	61	68	Right-handed alpha
Helix 18	AB9	B	83	103	Right-handed alpha
Helix 19	AC1	B	128	155	Right-handed alpha
Helix 20	AC2	B	162	172	Right-handed alpha
Helix 21	AC3	B	178	180	Right-handed 310
Helix 22	AC4	B	181	188	Right-handed alpha
Helix 23	AC5	C	8	13	Right-handed alpha
Helix 24	AC6	C	13	18	Right-handed alpha
Helix 25	AC7	C	23	37	Right-handed alpha
Helix 26	AC8	C	46	56	Right-handed alpha
Helix 27	AC9	C	58	60	Right-handed 310
Helix 28	AD1	C	61	68	Right-handed alpha
Helix 29	AD2	C	83	108	Right-handed alpha
Helix 30	AD3	C	121	155	Right-handed alpha
Helix 31	AD4	C	162	172	Right-handed alpha
Helix 32	AD5	C	178	180	Right-handed 310
Helix 33	AD6	C	181	188	Right-handed alpha
Helix 34	AD7	D	8	13	Right-handed alpha
Helix 35	AD8	D	13	18	Right-handed alpha
Helix 36	AD9	D	23	37	Right-handed alpha
Helix 37	AE1	D	46	56	Right-handed alpha
Helix 38	AE2	D	58	60	Right-handed 310
Helix 39	AE3	D	61	68	Right-handed alpha
Helix 40	AE4	D	83	108	Right-handed alpha
Helix 41	AE5	D	121	155	Right-handed alpha
Helix 42	AE6	D	162	172	Right-handed alpha
Helix 43	AE7	D	178	180	Right-handed 310
Helix 44	AE8	D	181	188	Right-handed alpha
Helix 45	AE9	E	8	13	Right-handed alpha
Helix 46	AF1	E	13	18	Right-handed alpha
Helix 47	AF2	E	23	38	Right-handed alpha
Helix 48	AF3	E	46	56	Right-handed alpha
Helix 49	AF4	E	61	68	Right-handed alpha
Helix 50	AF5	E	83	105	Right-handed alpha
Helix 51	AF6	E	130	155	Right-handed alpha
Helix 52	AF7	E	162	172	Right-handed alpha
Helix 53	AF8	E	178	180	Right-handed 310
Helix 54	AF9	E	181	188	Right-handed alpha
Helix 55	AG1	F	8	13	Right-handed alpha
Helix 56	AG2	F	13	18	Right-handed alpha
Helix 57	AG3	F	23	37	Right-handed alpha
Helix 58	AG4	F	46	56	Right-handed alpha
Helix 59	AG5	F	58	60	Right-handed 310
Helix 60	AG6	F	61	68	Right-handed alpha
Helix 61	AG7	F	83	105	Right-handed alpha
Helix 62	AG8	F	130	155	Right-handed alpha
Helix 63	AG9	F	162	172	Right-handed alpha
Helix 64	AH1	F	178	180	Right-handed 310
Helix 65	AH2	F	181	188	Right-handed alpha
Helix 66	AH3	G	8	11	Right-handed 310
Helix 67	AH4	G	13	18	Right-handed alpha
Helix 68	AH5	G	23	37	Right-handed alpha
Helix 69	AH6	G	46	56	Right-handed alpha
Helix 70	AH7	G	58	60	Right-handed 310
Helix 71	AH8	G	61	68	Right-handed alpha
Helix 72	AH9	G	82	106	Right-handed alpha
Helix 73	AI1	G	125	155	Right-handed alpha
Helix 74	AI2	G	162	173	Right-handed alpha
Helix 75	AI3	G	178	180	Right-handed 310
Helix 76	AI4	G	181	188	Right-handed alpha

There are 10 sheets in PDB entry 8SSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	40	45	parallel
Strand 3	A	2	6	parallel
Strand 4	A	157	159	parallel
Strand 5	A	175	176	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	B	80	82	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	40	45	parallel
Strand 3	B	2	6	parallel
Strand 4	B	157	159	parallel
Strand 5	B	175	176	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	40	45	parallel
Strand 3	C	2	6	parallel
Strand 4	C	157	159	parallel
Strand 5	C	175	176	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	D	80	82	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	40	45	parallel
Strand 3	D	2	6	parallel
Strand 4	D	157	159	parallel
Strand 5	D	175	176	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	40	45	parallel
Strand 3	E	2	6	parallel
Strand 4	E	157	159	parallel
Strand 5	E	175	176	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	82	first strand
Strand 2	F	80	82	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	72	first strand
Strand 2	F	41	45	parallel
Strand 3	F	3	6	parallel
Strand 4	F	157	159	parallel
Strand 5	F	175	176	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	72	first strand
Strand 2	G	40	45	parallel
Strand 3	G	2	6	parallel
Strand 4	G	157	159	parallel
Strand 5	G	175	176	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SSG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSG