Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SSK entry

There are 4 chains in PDB entry 8SSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3GLN 301
B
 ASP -5GLN 301
C
 GLY -3GLN 301
D
 ASP -5GLN 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8SSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 6Right-handed alpha
Helix 2
AA2
A
8 31Right-handed alpha
Helix 3
AA3
A
33 50Right-handed alpha
Helix 4
AA4
A
56 73Right-handed alpha
Helix 5
AA5
A
76 88Right-handed alpha
Helix 6
AA6
A
88 100Right-handed alpha
Helix 7
AA7
A
103 116Right-handed alpha
Helix 8
AA8
A
118 134Right-handed alpha
Helix 9
AA9
A
157 161Right-handed 310
Helix 10
AB1
A
182 195Right-handed alpha
Helix 11
AB2
A
200 205Right-handed alpha
Helix 12
AB3
A
210 223Right-handed alpha
Helix 13
AB4
A
232 234Right-handed 310
Helix 14
AB5
A
235 242Right-handed alpha
Helix 15
AB6
A
285 292Right-handed alpha
Helix 16
AB7
B
0 6Right-handed alpha
Helix 17
AB8
B
8 30Right-handed alpha
Helix 18
AB9
B
33 50Right-handed alpha
Helix 19
AC1
B
56 73Right-handed alpha
Helix 20
AC2
B
76 88Right-handed alpha
Helix 21
AC3
B
88 100Right-handed alpha
Helix 22
AC4
B
103 116Right-handed alpha
Helix 23
AC5
B
118 134Right-handed alpha
Helix 24
AC6
B
157 161Right-handed 310
Helix 25
AC7
B
182 195Right-handed alpha
Helix 26
AC8
B
200 205Right-handed alpha
Helix 27
AC9
B
210 223Right-handed alpha
Helix 28
AD1
B
232 234Right-handed 310
Helix 29
AD2
B
235 242Right-handed alpha
Helix 30
AD3
B
285 292Right-handed alpha
Helix 31
AD4
C
0 6Right-handed alpha
Helix 32
AD5
C
8 31Right-handed alpha
Helix 33
AD6
C
33 50Right-handed alpha
Helix 34
AD7
C
56 72Right-handed alpha
Helix 35
AD8
C
76 88Right-handed alpha
Helix 36
AD9
C
88 100Right-handed alpha
Helix 37
AE1
C
103 116Right-handed alpha
Helix 38
AE2
C
118 134Right-handed alpha
Helix 39
AE3
C
157 161Right-handed 310
Helix 40
AE4
C
182 195Right-handed alpha
Helix 41
AE5
C
200 205Right-handed alpha
Helix 42
AE6
C
210 221Right-handed alpha
Helix 43
AE7
C
232 234Right-handed 310
Helix 44
AE8
C
235 242Right-handed alpha
Helix 45
AE9
C
285 292Right-handed alpha
Helix 46
AF1
D
0 6Right-handed alpha
Helix 47
AF2
D
8 31Right-handed alpha
Helix 48
AF3
D
33 50Right-handed alpha
Helix 49
AF4
D
56 72Right-handed alpha
Helix 50
AF5
D
76 88Right-handed alpha
Helix 51
AF6
D
88 100Right-handed alpha
Helix 52
AF7
D
103 116Right-handed alpha
Helix 53
AF8
D
118 134Right-handed alpha
Helix 54
AF9
D
157 161Right-handed 310
Helix 55
AG1
D
182 194Right-handed alpha
Helix 56
AG2
D
200 205Right-handed alpha
Helix 57
AG3
D
210 221Right-handed alpha
Helix 58
AG4
D
232 234Right-handed 310
Helix 59
AG5
D
235 243Right-handed alpha
Helix 60
AG6
D
285 292Right-handed alpha
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There are 4 sheets in PDB entry 8SSK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
271 275anti-parallel
Strand 4
A
257 265anti-parallel
Strand 5
A
245 250anti-parallel
Strand 6
A
293 299anti-parallel
Strand 7
A
227 230anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 170first strand
Strand 2
B
280 284anti-parallel
Strand 3
B
271 275anti-parallel
Strand 4
B
257 265anti-parallel
Strand 5
B
245 250anti-parallel
Strand 6
B
293 299anti-parallel
Strand 7
B
227 230anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 170first strand
Strand 2
C
280 284anti-parallel
Strand 3
C
271 275anti-parallel
Strand 4
C
257 265anti-parallel
Strand 5
C
245 250anti-parallel
Strand 6
C
293 299anti-parallel
Strand 7
C
227 230anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 170first strand
Strand 2
D
280 284anti-parallel
Strand 3
D
271 275anti-parallel
Strand 4
D
257 265anti-parallel
Strand 5
D
245 250anti-parallel
Strand 6
D
293 299anti-parallel
Strand 7
D
227 230anti-parallel
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