Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SSL entry

There are 2 chains in PDB entry 8SSL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 22MET 1093
B
 GLY 22ARG 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are138 helices in PDB entry 8SSL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 53Right-handed alpha
Helix 2
AA2
A
65 77Right-handed alpha
Helix 3
AA3
A
89 104Right-handed alpha
Helix 4
AA4
A
116 119Right-handed 310
Helix 5
AA5
A
120 131Right-handed alpha
Helix 6
AA6
A
137 145Right-handed alpha
Helix 7
AA7
A
145 157Right-handed alpha
Helix 8
AA8
A
161 165Right-handed 310
Helix 9
AA9
A
169 175Right-handed alpha
Helix 10
AB1
A
177 190Right-handed alpha
Helix 11
AB2
A
193 206Right-handed alpha
Helix 12
AB3
A
221 238Right-handed alpha
Helix 13
AB4
A
291 302Right-handed alpha
Helix 14
AB5
A
339 345Right-handed 310
Helix 15
AB6
A
346 351Right-handed alpha
Helix 16
AB7
A
363 380Right-handed alpha
Helix 17
AB8
A
385 389Right-handed 310
Helix 18
AB9
A
401 419Right-handed alpha
Helix 19
AC1
A
443 447Right-handed 310
Helix 20
AC2
A
448 485Right-handed alpha
Helix 21
AC3
A
492 505Right-handed alpha
Helix 22
AC4
A
507 515Right-handed alpha
Helix 23
AC5
A
515 523Right-handed alpha
Helix 24
AC6
A
561 572Right-handed alpha
Helix 25
AC7
A
603 615Right-handed alpha
Helix 26
AC8
A
628 634Right-handed alpha
Helix 27
AC9
A
640 645Right-handed alpha
Helix 28
AD1
A
656 664Right-handed alpha
Helix 29
AD2
A
683 708Right-handed alpha
Helix 30
AD3
A
712 727Right-handed alpha
Helix 31
AD4
A
734 742Right-handed alpha
Helix 32
AD5
A
748 765Right-handed alpha
Helix 33
AD6
A
778 784Right-handed alpha
Helix 34
AD7
A
787 808Right-handed alpha
Helix 35
AD8
A
812 820Right-handed 310
Helix 36
AD9
A
831 850Right-handed alpha
Helix 37
AE1
A
854 859Right-handed alpha
Helix 38
AE2
A
876 893Right-handed alpha
Helix 39
AE3
A
913 928Right-handed alpha
Helix 40
AE4
A
929 934Right-handed 310
Helix 41
AE5
A
941 965Right-handed alpha
Helix 42
AE6
A
966 975Right-handed alpha
Helix 43
AE7
A
975 995Right-handed alpha
Helix 44
AE8
A
1023 1041Right-handed alpha
Helix 45
AE9
A
1044 1058Right-handed alpha
Helix 46
AF1
A
1061 1070Right-handed alpha
Helix 47
AF2
A
1074 1086Right-handed alpha
Helix 48
AF3
B
40 53Right-handed alpha
Helix 49
AF4
B
65 77Right-handed alpha
Helix 50
AF5
B
90 104Right-handed alpha
Helix 51
AF6
B
116 119Right-handed 310
Helix 52
AF7
B
120 131Right-handed alpha
Helix 53
AF8
B
137 145Right-handed alpha
Helix 54
AF9
B
145 157Right-handed alpha
Helix 55
AG1
B
169 175Right-handed alpha
Helix 56
AG2
B
177 190Right-handed alpha
Helix 57
AG3
B
193 208Right-handed alpha
Helix 58
AG4
B
222 238Right-handed alpha
Helix 59
AG5
B
291 301Right-handed alpha
Helix 60
AG6
B
338 343Right-handed alpha
Helix 61
AG7
B
344 350Right-handed 310
Helix 62
AG8
B
363 380Right-handed alpha
Helix 63
AG9
B
385 389Right-handed 310
Helix 64
AH1
B
401 418Right-handed alpha
Helix 65
AH2
B
443 447Right-handed 310
Helix 66
AH3
B
448 488Right-handed alpha
Helix 67
AH4
B
491 505Right-handed alpha
Helix 68
AH5
B
506 515Right-handed alpha
Helix 69
AH6
B
515 525Right-handed alpha
Helix 70
AH7
B
561 572Right-handed alpha
Helix 71
AH8
B
603 615Right-handed alpha
Helix 72
AH9
B
628 633Right-handed alpha
Helix 73
AI1
B
640 645Right-handed alpha
Helix 74
AI2
B
656 664Right-handed alpha
Helix 75
AI3
B
683 708Right-handed alpha
Helix 76
AI4
B
712 727Right-handed alpha
Helix 77
AI5
B
734 742Right-handed alpha
Helix 78
AI6
B
748 766Right-handed alpha
Helix 79
AI7
B
778 785Right-handed alpha
Helix 80
AI8
B
787 808Right-handed alpha
Helix 81
AI9
B
812 816Right-handed 310
Helix 82
AJ1
B
831 849Right-handed alpha
Helix 83
AJ2
B
854 859Right-handed alpha
Helix 84
AJ3
B
875 893Right-handed alpha
Helix 85
AJ4
B
913 927Right-handed alpha
Helix 86
AJ5
B
929 934Right-handed 310
Helix 87
AJ6
B
942 965Right-handed alpha
Helix 88
AJ7
B
966 975Right-handed alpha
Helix 89
AJ8
B
975 995Right-handed alpha
Helix 90
AJ9
B
1023 1041Right-handed alpha
Helix 91
AK1
B
1044 1058Right-handed alpha
Helix 92
AK2
B
1061 1070Right-handed alpha
Helix 93
AK3
B
1074 1086Right-handed alpha
Helix 94
AK4
C
40 53Right-handed alpha
Helix 95
AK5
C
65 77Right-handed alpha
Helix 96
AK6
C
89 104Right-handed alpha
Helix 97
AK7
C
120 131Right-handed alpha
Helix 98
AK8
C
137 145Right-handed alpha
Helix 99
AK9
C
145 157Right-handed alpha
Helix 100
AL1
C
161 165Right-handed 310
Helix 101
AL2
C
169 175Right-handed alpha
Helix 102
AL3
C
176 190Right-handed alpha
Helix 103
AL4
C
193 208Right-handed alpha
Helix 104
AL5
C
223 238Right-handed alpha
Helix 105
AL6
C
291 301Right-handed alpha
Helix 106
AL7
C
321 325Right-handed 310
Helix 107
AL8
C
363 380Right-handed alpha
Helix 108
AL9
C
385 389Right-handed 310
Helix 109
AM1
C
401 418Right-handed alpha
Helix 110
AM2
C
443 447Right-handed 310
Helix 111
AM3
C
448 485Right-handed alpha
Helix 112
AM4
C
492 505Right-handed alpha
Helix 113
AM5
C
507 515Right-handed alpha
Helix 114
AM6
C
515 525Right-handed alpha
Helix 115
AM7
C
561 572Right-handed alpha
Helix 116
AM8
C
603 616Right-handed alpha
Helix 117
AM9
C
628 634Right-handed alpha
Helix 118
AN1
C
640 646Right-handed alpha
Helix 119
AN2
C
656 664Right-handed alpha
Helix 120
AN3
C
683 708Right-handed alpha
Helix 121
AN4
C
712 727Right-handed alpha
Helix 122
AN5
C
735 742Right-handed alpha
Helix 123
AN6
C
748 767Right-handed alpha
Helix 124
AN7
C
778 785Right-handed alpha
Helix 125
AN8
C
787 809Right-handed alpha
Helix 126
AN9
C
812 820Right-handed 310
Helix 127
AO1
C
831 849Right-handed alpha
Helix 128
AO2
C
854 859Right-handed alpha
Helix 129
AO3
C
875 893Right-handed alpha
Helix 130
AO4
C
913 929Right-handed alpha
Helix 131
AO5
C
930 934Right-handed 310
Helix 132
AO6
C
941 965Right-handed alpha
Helix 133
AO7
C
967 975Right-handed alpha
Helix 134
AO8
C
975 995Right-handed alpha
Helix 135
AO9
C
1023 1041Right-handed alpha
Helix 136
AP1
C
1041 1058Right-handed alpha
Helix 137
AP2
C
1061 1070Right-handed alpha
Helix 138
AP3
C
1074 1085Right-handed alpha
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There are 18 sheets in PDB entry 8SSL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
28 33parallel
Strand 3
A
80 84parallel
Strand 4
A
110 114parallel
Strand 5
A
134 136parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 280first strand
Strand 2
A
243 249parallel
Strand 3
A
306 310parallel
Strand 4
A
211 216parallel
Strand 5
A
327 332parallel
Strand 6
A
353 356parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 532first strand
Strand 2
A
535 540anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
550 552anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
621 626parallel
Strand 3
A
674 679parallel
Strand 4
A
730 732parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 777first strand
Strand 2
A
821 826parallel
Strand 3
A
864 866parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
110 114parallel
Strand 3
B
80 84parallel
Strand 4
B
28 33parallel
Strand 5
B
56 57parallel
Strand 6
B
258 259parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 280first strand
Strand 2
B
243 249parallel
Strand 3
B
306 314parallel
Strand 4
B
211 217parallel
Strand 5
B
327 332parallel
Strand 6
B
353 357parallel
Strand 7
B
391 394parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 532first strand
Strand 2
B
535 540anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 544first strand
Strand 2
B
550 552anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
597 598first strand
Strand 2
B
621 626parallel
Strand 3
B
674 679parallel
Strand 4
B
730 732parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
775 777first strand
Strand 2
B
821 825parallel
Strand 3
B
862 865parallel
Strand 4
B
898 899parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
28 33parallel
Strand 3
C
80 84parallel
Strand 4
C
110 114parallel
Strand 5
C
134 135parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
275 280first strand
Strand 2
C
243 249parallel
Strand 3
C
306 310parallel
Strand 4
C
211 214parallel
Strand 5
C
327 329parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
527 532first strand
Strand 2
C
535 540anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
542 544first strand
Strand 2
C
550 552anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
597 598first strand
Strand 2
C
621 626parallel
Strand 3
C
674 679parallel
Strand 4
C
730 733parallel
Strand 5
C
772 774parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
776 777first strand
Strand 2
C
822 826parallel
Strand 3
C
863 866parallel
Strand 4
C
898 899parallel
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