Analysis of interatomic Contacts of Structural Units in PDB entry:
8SSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SSW entry

There are 4 chains in PDB entry 8SSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 134TYR 580
B
 ASP 134TYR 580
C
 C 1 C 23
D
 G 5 C 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8SSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 152Right-handed alpha
Helix 2
AA2
A
181 185Right-handed 310
Helix 3
AA3
A
188 199Right-handed alpha
Helix 4
AA4
A
204 216Right-handed alpha
Helix 5
AA5
A
230 246Right-handed alpha
Helix 6
AA6
A
248 253Right-handed alpha
Helix 7
AA7
A
275 290Right-handed alpha
Helix 8
AA8
A
305 315Right-handed alpha
Helix 9
AA9
A
323 333Right-handed alpha
Helix 10
AB1
A
348 355Right-handed alpha
Helix 11
AB2
A
357 367Right-handed alpha
Helix 12
AB3
A
386 397Right-handed alpha
Helix 13
AB4
A
423 425Right-handed 310
Helix 14
AB5
A
426 437Right-handed alpha
Helix 15
AB6
A
450 464Right-handed alpha
Helix 16
AB7
A
476 490Right-handed alpha
Helix 17
AB8
A
499 502Right-handed 310
Helix 18
AB9
A
521 530Right-handed alpha
Helix 19
AC1
A
546 551Right-handed 310
Helix 20
AC2
A
552 563Right-handed alpha
Helix 21
AC3
A
568 580Right-handed alpha
Helix 22
AC4
B
143 152Right-handed alpha
Helix 23
AC5
B
181 185Right-handed 310
Helix 24
AC6
B
188 199Right-handed alpha
Helix 25
AC7
B
204 216Right-handed alpha
Helix 26
AC8
B
229 246Right-handed alpha
Helix 27
AC9
B
248 254Right-handed alpha
Helix 28
AD1
B
275 290Right-handed alpha
Helix 29
AD2
B
305 314Right-handed alpha
Helix 30
AD3
B
323 333Right-handed alpha
Helix 31
AD4
B
348 355Right-handed alpha
Helix 32
AD5
B
357 366Right-handed alpha
Helix 33
AD6
B
386 397Right-handed alpha
Helix 34
AD7
B
423 425Right-handed 310
Helix 35
AD8
B
426 437Right-handed alpha
Helix 36
AD9
B
450 464Right-handed alpha
Helix 37
AE1
B
476 490Right-handed alpha
Helix 38
AE2
B
499 502Right-handed 310
Helix 39
AE3
B
521 530Right-handed alpha
Helix 40
AE4
B
546 551Right-handed 310
Helix 41
AE5
B
552 563Right-handed alpha
Helix 42
AE6
B
568 580Right-handed alpha
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There are 6 sheets in PDB entry 8SSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
220 223parallel
Strand 4
A
377 382parallel
Strand 5
A
343 346parallel
Strand 6
A
269 272parallel
Strand 7
A
319 322parallel
Strand 8
A
297 300parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 421first strand
Strand 2
A
539 545parallel
Strand 3
A
510 515parallel
Strand 4
A
444 447parallel
Strand 5
A
494 497parallel
Strand 6
A
468 471parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 421first strand
Strand 2
A
539 545parallel
Strand 3
A
510 515parallel
Strand 4
A
532 533parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
401 405anti-parallel
Strand 3
B
220 223parallel
Strand 4
B
377 382parallel
Strand 5
B
343 346parallel
Strand 6
B
269 272parallel
Strand 7
B
319 322parallel
Strand 8
B
297 300parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 421first strand
Strand 2
B
539 545parallel
Strand 3
B
510 515parallel
Strand 4
B
444 447parallel
Strand 5
B
494 497parallel
Strand 6
B
468 471parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 421first strand
Strand 2
B
539 545parallel
Strand 3
B
510 515parallel
Strand 4
B
532 533parallel
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