Analysis of interatomic Contacts of Structural Units in PDB entry:
8ST4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ST4 entry

There are 11 chains in PDB entry 8ST4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	ALA 383
B	THR 1	THR 365
C	THR 1	THR 365
D	GLU 5	ALA 383
E	THR 1	THR 365
F	ASP 1	GLU 218
G	VAL 3	ARG 220
H	ASP 1	GLU 218
I	VAL 3	ARG 220
J	ASP 1	GLU 218
K	VAL 3	ARG 220

There are 76 helices in PDB entry 8ST4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	19	Right-handed alpha
Helix 2	AA2	A	75	80	Right-handed 310
Helix 3	AA3	A	90	92	Right-handed 310
Helix 4	AA4	A	217	224	Right-handed alpha
Helix 5	AA5	A	224	233	Right-handed alpha
Helix 6	AA6	A	234	235	Right-handed 310
Helix 7	AA7	A	236	241	Right-handed 310
Helix 8	AA8	A	242	246	Right-handed 310
Helix 9	AA9	A	247	268	Right-handed alpha
Helix 10	AB1	A	278	306	Right-handed alpha
Helix 11	AB2	A	315	330	Right-handed alpha
Helix 12	AB3	A	341	382	Right-handed alpha
Helix 13	AB4	B	2	13	Right-handed alpha
Helix 14	AB5	B	65	68	Right-handed 310
Helix 15	AB6	B	70	75	Right-handed 310
Helix 16	AB7	B	85	87	Right-handed 310
Helix 17	AB8	B	209	226	Right-handed alpha
Helix 18	AB9	B	227	232	Right-handed 310
Helix 19	AC1	B	234	238	Right-handed 310
Helix 20	AC2	B	239	262	Right-handed alpha
Helix 21	AC3	B	270	298	Right-handed alpha
Helix 22	AC4	B	307	315	Right-handed alpha
Helix 23	AC5	B	316	323	Right-handed alpha
Helix 24	AC6	B	338	364	Right-handed alpha
Helix 25	AC7	C	2	12	Right-handed alpha
Helix 26	AC8	C	70	75	Right-handed 310
Helix 27	AC9	C	85	87	Right-handed 310
Helix 28	AD1	C	209	225	Right-handed alpha
Helix 29	AD2	C	226	227	Right-handed 310
Helix 30	AD3	C	228	233	Right-handed 310
Helix 31	AD4	C	234	238	Right-handed 310
Helix 32	AD5	C	239	262	Right-handed alpha
Helix 33	AD6	C	270	298	Right-handed alpha
Helix 34	AD7	C	307	315	Right-handed alpha
Helix 35	AD8	C	316	322	Right-handed alpha
Helix 36	AD9	C	338	363	Right-handed alpha
Helix 37	AE1	D	6	19	Right-handed alpha
Helix 38	AE2	D	75	80	Right-handed 310
Helix 39	AE3	D	90	92	Right-handed 310
Helix 40	AE4	D	217	233	Right-handed alpha
Helix 41	AE5	D	234	235	Right-handed 310
Helix 42	AE6	D	236	240	Right-handed 310
Helix 43	AE7	D	247	268	Right-handed alpha
Helix 44	AE8	D	278	306	Right-handed alpha
Helix 45	AE9	D	315	330	Right-handed alpha
Helix 46	AF1	D	341	382	Right-handed alpha
Helix 47	AF2	E	2	13	Right-handed alpha
Helix 48	AF3	E	70	75	Right-handed 310
Helix 49	AF4	E	85	87	Right-handed 310
Helix 50	AF5	E	209	225	Right-handed alpha
Helix 51	AF6	E	226	227	Right-handed 310
Helix 52	AF7	E	228	232	Right-handed 310
Helix 53	AF8	E	234	238	Right-handed 310
Helix 54	AF9	E	239	262	Right-handed alpha
Helix 55	AG1	E	270	298	Right-handed alpha
Helix 56	AG2	E	307	323	Right-handed alpha
Helix 57	AG3	E	338	363	Right-handed alpha
Helix 58	AG4	F	84	88	Right-handed 310
Helix 59	AG5	F	126	133	Right-handed alpha
Helix 60	AG6	F	188	192	Right-handed alpha
Helix 61	AG7	G	29	33	Right-handed 310
Helix 62	AG8	G	63	66	Right-handed 310
Helix 63	AG9	G	88	92	Right-handed 310
Helix 64	AH1	G	193	198	Right-handed alpha
Helix 65	AH2	G	207	210	Right-handed 310
Helix 66	AH3	H	84	88	Right-handed 310
Helix 67	AH4	H	126	133	Right-handed alpha
Helix 68	AH5	H	187	192	Right-handed alpha
Helix 69	AH6	I	29	33	Right-handed 310
Helix 70	AH7	I	63	66	Right-handed 310
Helix 71	AH8	J	84	88	Right-handed 310
Helix 72	AH9	J	126	133	Right-handed alpha
Helix 73	AI1	J	187	193	Right-handed alpha
Helix 74	AI2	K	29	33	Right-handed 310
Helix 75	AI3	K	88	92	Right-handed 310
Helix 76	AI4	K	193	198	Right-handed alpha

There are 51 sheets in PDB entry 8ST4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	120	125	anti-parallel
Strand 4	A	56	73	anti-parallel
Strand 5	A	128	134	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	120	125	anti-parallel
Strand 4	A	56	73	anti-parallel
Strand 5	A	36	51	anti-parallel
Strand 6	A	163	167	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	203	215	anti-parallel
Strand 4	A	183	196	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	109	113	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	123	129	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	109	113	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	31	46	anti-parallel
Strand 6	B	158	162	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	197	207	anti-parallel
Strand 4	B	178	182	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	197	207	anti-parallel
Strand 4	B	185	189	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	109	113	anti-parallel
Strand 3	C	117	120	anti-parallel
Strand 4	C	51	63	anti-parallel
Strand 5	C	123	129	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	109	113	anti-parallel
Strand 3	C	117	120	anti-parallel
Strand 4	C	51	63	anti-parallel
Strand 5	C	31	46	anti-parallel
Strand 6	C	158	162	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	141	150	anti-parallel
Strand 3	C	197	207	anti-parallel
Strand 4	C	178	182	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	141	150	anti-parallel
Strand 3	C	197	207	anti-parallel
Strand 4	C	185	189	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	56	73	anti-parallel
Strand 5	D	128	134	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	56	73	anti-parallel
Strand 5	D	36	51	anti-parallel
Strand 6	D	163	167	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	99	first strand
Strand 2	D	146	155	anti-parallel
Strand 3	D	203	215	anti-parallel
Strand 4	D	183	196	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	83	first strand
Strand 2	E	109	113	anti-parallel
Strand 3	E	115	120	anti-parallel
Strand 4	E	51	68	anti-parallel
Strand 5	E	123	129	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	83	first strand
Strand 2	E	109	113	anti-parallel
Strand 3	E	115	120	anti-parallel
Strand 4	E	51	68	anti-parallel
Strand 5	E	31	46	anti-parallel
Strand 6	E	158	162	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	141	150	anti-parallel
Strand 3	E	197	207	anti-parallel
Strand 4	E	178	182	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	141	150	anti-parallel
Strand 3	E	197	207	anti-parallel
Strand 4	E	185	189	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	75	80	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	110	parallel
Strand 3	F	90	92	anti-parallel
Strand 4	F	40	43	anti-parallel
Strand 5	F	50	53	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	134	144	anti-parallel
Strand 3	F	178	187	anti-parallel
Strand 4	F	168	169	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	152	first strand
Strand 2	F	200	203	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	155	first strand
Strand 2	F	158	159	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	198	first strand
Strand 2	F	213	215	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	114	118	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	59	61	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	130	first strand
Strand 2	G	147	150	anti-parallel
Strand 3	G	182	191	anti-parallel
Strand 4	G	171	172	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	145	first strand
Strand 2	G	182	191	anti-parallel
Strand 3	G	176	177	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	202	206	anti-parallel
Strand 3	G	211	214	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	75	80	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	110	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	38	43	anti-parallel
Strand 5	H	50	53	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	123	first strand
Strand 2	H	135	144	anti-parallel
Strand 3	H	178	180	anti-parallel
Strand 4	H	168	169	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	123	first strand
Strand 2	H	135	144	anti-parallel
Strand 3	H	182	186	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	196	203	anti-parallel
Strand 3	H	210	215	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	155	first strand
Strand 2	H	158	159	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	26	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	69	74	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	114	118	parallel
Strand 3	I	93	100	anti-parallel
Strand 4	I	34	40	anti-parallel
Strand 5	I	47	52	anti-parallel
Strand 6	I	59	61	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	127	128	first strand
Strand 2	I	147	152	anti-parallel
Strand 3	I	182	191	anti-parallel
Strand 4	I	142	144	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	127	128	first strand
Strand 2	I	147	152	anti-parallel
Strand 3	I	182	191	anti-parallel
Strand 4	I	170	172	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	161	first strand
Strand 2	I	201	206	anti-parallel
Strand 3	I	211	216	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	110	parallel
Strand 3	J	89	95	anti-parallel
Strand 4	J	38	43	anti-parallel
Strand 5	J	50	54	anti-parallel
Strand 6	J	58	59	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	119	123	first strand
Strand 2	J	135	144	anti-parallel
Strand 3	J	178	180	anti-parallel
Strand 4	J	168	169	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	119	123	first strand
Strand 2	J	135	144	anti-parallel
Strand 3	J	183	186	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	158	160	first strand
Strand 2	J	149	155	anti-parallel
Strand 3	J	200	203	anti-parallel
Strand 4	J	206	210	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	196	198	first strand
Strand 2	J	213	215	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	26	anti-parallel
Strand 3	K	79	84	anti-parallel
Strand 4	K	69	74	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	114	118	parallel
Strand 3	K	93	100	anti-parallel
Strand 4	K	34	40	anti-parallel
Strand 5	K	47	52	anti-parallel
Strand 6	K	59	61	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	129	131	first strand
Strand 2	K	146	152	anti-parallel
Strand 3	K	182	185	anti-parallel
Strand 4	K	173	177	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	142	144	first strand
Strand 2	K	189	191	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	203	206	first strand
Strand 2	K	211	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ST4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ST4