Analysis of interatomic Contacts of Structural Units in PDB entry:
8ST8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ST8 entry

There are 2 chains in PDB entry 8ST8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 588ALA 782
B
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8ST8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
592 595Right-handed 310
Helix 2
AA2
A
596 613Right-handed alpha
Helix 3
AA3
A
618 629Right-handed alpha
Helix 4
AA4
A
640 652Right-handed alpha
Helix 5
AA5
A
653 659Right-handed 310
Helix 6
AA6
A
661 672Right-handed alpha
Helix 7
AA7
A
678 698Right-handed alpha
Helix 8
AA8
A
709 727Right-handed alpha
Helix 9
AA9
A
728 731Right-handed 310
Helix 10
AB1
A
733 746Right-handed alpha
Helix 11
AB2
A
753 769Right-handed alpha
Helix 12
AB3
A
769 777Right-handed alpha
Helix 13
AB4
A
778 782Right-handed 310
Helix 14
AB5
B
22 35Right-handed alpha
Helix 15
AB6
B
37 41Right-handed 310
Helix 16
AB7
B
55 60Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8ST8.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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