Analysis of interatomic Contacts of Structural Units in PDB entry:
8ST9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ST9 entry

There are 4 chains in PDB entry 8ST9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 606ARG 782
B
 MET 1GLY 75
C
 PRO 605ARG 782
D
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8ST9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
606 616Right-handed alpha
Helix 2
AA2
A
618 629Right-handed alpha
Helix 3
AA3
A
640 652Right-handed alpha
Helix 4
AA4
A
661 670Right-handed alpha
Helix 5
AA5
A
678 698Right-handed alpha
Helix 6
AA6
A
709 727Right-handed alpha
Helix 7
AA7
A
728 732Right-handed 310
Helix 8
AA8
A
733 746Right-handed alpha
Helix 9
AA9
A
747 750Right-handed 310
Helix 10
AB1
A
753 769Right-handed alpha
Helix 11
AB2
A
769 777Right-handed alpha
Helix 12
AB3
A
778 782Right-handed 310
Helix 13
AB4
B
22 35Right-handed alpha
Helix 14
AB5
B
37 39Right-handed 310
Helix 15
AB6
B
56 60Right-handed 310
Helix 16
AB7
C
606 616Right-handed alpha
Helix 17
AB8
C
618 628Right-handed alpha
Helix 18
AB9
C
629 631Right-handed 310
Helix 19
AC1
C
640 652Right-handed alpha
Helix 20
AC2
C
661 670Right-handed alpha
Helix 21
AC3
C
678 697Right-handed alpha
Helix 22
AC4
C
709 725Right-handed alpha
Helix 23
AC5
C
727 732Right-handed 310
Helix 24
AC6
C
733 745Right-handed alpha
Helix 25
AC7
C
746 750Right-handed 310
Helix 26
AC8
C
753 769Right-handed alpha
Helix 27
AC9
C
769 776Right-handed alpha
Helix 28
AD1
C
778 782Right-handed 310
Helix 29
AD2
D
22 35Right-handed alpha
Helix 30
AD3
D
37 39Right-handed 310
Helix 31
AD4
D
56 60Right-handed 310
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There are 4 sheets in PDB entry 8ST9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 656first strand
Strand 2
A
659 660anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
655 656first strand
Strand 2
C
659 660anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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