Analysis of interatomic Contacts of Structural Units in PDB entry:
8STB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8STB entry

There are 2 chains in PDB entry 8STB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 11THR 244
A
 PRO 11THR 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8STB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
25 38Right-handed alpha
Helix 2
AA2
B
86 97Right-handed alpha
Helix 3
AA3
B
154 167Right-handed alpha
Helix 4
AA4
B
205 213Right-handed alpha
Helix 5
AA5
A
25 38Right-handed alpha
Helix 6
AA6
A
86 97Right-handed alpha
Helix 7
AA7
A
154 167Right-handed alpha
Helix 8
AA8
A
205 213Right-handed alpha
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There are 5 sheets in PDB entry 8STB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
16 23parallel
Strand 4
B
77 83anti-parallel
Strand 5
B
124 130parallel
Strand 6
B
112 118anti-parallel
Strand 7
B
100 107anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
A
74 75anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
B
145 152parallel
Strand 3
B
195 202anti-parallel
Strand 4
B
238 243parallel
Strand 5
B
226 232anti-parallel
Strand 6
B
216 223anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
59 66anti-parallel
Strand 4
A
16 23parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
124 130parallel
Strand 7
A
112 118anti-parallel
Strand 8
A
100 108anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
145 152parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
238 243parallel
Strand 5
A
226 232anti-parallel
Strand 6
A
216 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il