Analysis of interatomic Contacts of Structural Units in PDB entry:
8STV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8STV entry

There are 4 chains in PDB entry 8STV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	ALA 554
B	ILE 5	GLN 428
C	SER 3	ILE 556
D	VAL 8	TYR 427

There are 59 helices in PDB entry 8STV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	77	84	Right-handed alpha
Helix 3	AA3	A	96	100	Right-handed 310
Helix 4	AA4	A	113	118	Right-handed alpha
Helix 5	AA5	A	121	126	Right-handed alpha
Helix 6	AA6	A	127	129	Right-handed 310
Helix 7	AA7	A	155	175	Right-handed alpha
Helix 8	AA8	A	194	212	Right-handed alpha
Helix 9	AA9	A	253	268	Right-handed alpha
Helix 10	AB1	A	276	283	Right-handed alpha
Helix 11	AB2	A	296	311	Right-handed alpha
Helix 12	AB3	A	363	383	Right-handed alpha
Helix 13	AB4	A	394	405	Right-handed alpha
Helix 14	AB5	A	473	488	Right-handed alpha
Helix 15	AB6	A	499	508	Right-handed alpha
Helix 16	AB7	A	515	528	Right-handed alpha
Helix 17	AB8	A	542	553	Right-handed alpha
Helix 18	AB9	B	27	44	Right-handed alpha
Helix 19	AC1	B	77	92	Right-handed alpha
Helix 20	AC2	B	112	118	Right-handed 310
Helix 21	AC3	B	124	129	Right-handed 310
Helix 22	AC4	B	134	138	Right-handed 310
Helix 23	AC5	B	154	175	Right-handed alpha
Helix 24	AC6	B	194	212	Right-handed alpha
Helix 25	AC7	B	235	239	Right-handed 310
Helix 26	AC8	B	254	268	Right-handed alpha
Helix 27	AC9	B	276	283	Right-handed alpha
Helix 28	AD1	B	296	312	Right-handed alpha
Helix 29	AD2	B	363	384	Right-handed alpha
Helix 30	AD3	B	394	406	Right-handed alpha
Helix 31	AD4	C	27	44	Right-handed alpha
Helix 32	AD5	C	77	84	Right-handed alpha
Helix 33	AD6	C	113	118	Right-handed alpha
Helix 34	AD7	C	121	126	Right-handed alpha
Helix 35	AD8	C	127	129	Right-handed 310
Helix 36	AD9	C	155	175	Right-handed alpha
Helix 37	AE1	C	194	212	Right-handed alpha
Helix 38	AE2	C	254	268	Right-handed alpha
Helix 39	AE3	C	276	283	Right-handed alpha
Helix 40	AE4	C	296	310	Right-handed alpha
Helix 41	AE5	C	363	383	Right-handed alpha
Helix 42	AE6	C	394	405	Right-handed alpha
Helix 43	AE7	C	473	488	Right-handed alpha
Helix 44	AE8	C	499	508	Right-handed alpha
Helix 45	AE9	C	515	528	Right-handed alpha
Helix 46	AF1	C	542	553	Right-handed alpha
Helix 47	AF2	D	27	44	Right-handed alpha
Helix 48	AF3	D	77	92	Right-handed alpha
Helix 49	AF4	D	113	118	Right-handed alpha
Helix 50	AF5	D	123	129	Right-handed 310
Helix 51	AF6	D	154	160	Right-handed alpha
Helix 52	AF7	D	160	175	Right-handed alpha
Helix 53	AF8	D	194	209	Right-handed alpha
Helix 54	AF9	D	254	271	Right-handed alpha
Helix 55	AG1	D	278	283	Right-handed alpha
Helix 56	AG2	D	296	312	Right-handed alpha
Helix 57	AG3	D	363	384	Right-handed alpha
Helix 58	AG4	D	394	402	Right-handed alpha
Helix 59	AG5	D	403	405	Right-handed 310

There are 23 sheets in PDB entry 8STV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	143	146	anti-parallel
Strand 3	A	130	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	73	75	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	110	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	179	183	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	232	234	anti-parallel
Strand 3	A	239	241	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	336	342	anti-parallel
Strand 3	A	326	332	anti-parallel
Strand 4	A	388	391	parallel
Strand 5	A	414	416	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	470	first strand
Strand 2	A	452	459	anti-parallel
Strand 3	A	438	447	anti-parallel
Strand 4	A	492	497	parallel
Strand 5	A	530	535	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	130	132	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	72	75	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	105	110	anti-parallel
Strand 4	B	233	234	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	292	293	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	355	first strand
Strand 2	B	336	344	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	388	391	parallel
Strand 5	B	414	416	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	143	146	anti-parallel
Strand 3	C	130	131	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	110	first strand
Strand 2	C	186	191	anti-parallel
Strand 3	C	179	183	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	232	234	anti-parallel
Strand 3	C	239	241	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	292	293	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	354	first strand
Strand 2	C	337	344	anti-parallel
Strand 3	C	326	331	anti-parallel
Strand 4	C	388	391	parallel
Strand 5	C	414	416	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	512	513	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	468	first strand
Strand 2	C	454	459	anti-parallel
Strand 3	C	438	445	anti-parallel
Strand 4	C	492	497	parallel
Strand 5	C	530	535	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	49	first strand
Strand 2	D	142	146	anti-parallel
Strand 3	D	130	132	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	64	first strand
Strand 2	D	71	75	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	110	first strand
Strand 2	D	186	191	anti-parallel
Strand 3	D	179	182	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	253	first strand
Strand 2	D	292	293	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	354	first strand
Strand 2	D	337	342	anti-parallel
Strand 3	D	326	331	anti-parallel
Strand 4	D	388	391	parallel
Strand 5	D	414	416	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8STV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8STV