Analysis of interatomic Contacts of Structural Units in PDB entry:
8STW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8STW entry

There are 6 chains in PDB entry 8STW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 44	LYS 398
B	MET 44	GLU 399
C	MET 44	ASP 401
D	MET 44	PHE 396
E	MET 44	LEU 397
F	MET 44	LEU 397

There are102 helices in PDB entry 8STW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	94	99	Right-handed alpha
Helix 4	AA4	A	111	113	Right-handed 310
Helix 5	AA5	A	119	133	Right-handed alpha
Helix 6	AA6	A	148	162	Right-handed alpha
Helix 7	AA7	A	174	184	Right-handed alpha
Helix 8	AA8	A	202	214	Right-handed alpha
Helix 9	AA9	A	226	235	Right-handed alpha
Helix 10	AB1	A	235	245	Right-handed alpha
Helix 11	AB2	A	258	272	Right-handed alpha
Helix 12	AB3	A	290	295	Right-handed 310
Helix 13	AB4	A	316	320	Right-handed 310
Helix 14	AB5	A	327	343	Right-handed alpha
Helix 15	AB6	A	347	361	Right-handed alpha
Helix 16	AB7	A	377	382	Right-handed 310
Helix 17	AB8	A	387	394	Right-handed alpha
Helix 18	AB9	B	79	83	Right-handed 310
Helix 19	AC1	B	94	99	Right-handed alpha
Helix 20	AC2	B	111	113	Right-handed 310
Helix 21	AC3	B	119	133	Right-handed alpha
Helix 22	AC4	B	148	162	Right-handed alpha
Helix 23	AC5	B	174	184	Right-handed alpha
Helix 24	AC6	B	202	214	Right-handed alpha
Helix 25	AC7	B	226	235	Right-handed alpha
Helix 26	AC8	B	235	244	Right-handed alpha
Helix 27	AC9	B	258	272	Right-handed alpha
Helix 28	AD1	B	290	295	Right-handed 310
Helix 29	AD2	B	316	320	Right-handed 310
Helix 30	AD3	B	327	343	Right-handed alpha
Helix 31	AD4	B	347	361	Right-handed alpha
Helix 32	AD5	B	362	364	Right-handed 310
Helix 33	AD6	B	377	382	Right-handed 310
Helix 34	AD7	B	387	394	Right-handed alpha
Helix 35	AD8	C	59	63	Right-handed 310
Helix 36	AD9	C	79	83	Right-handed 310
Helix 37	AE1	C	94	99	Right-handed alpha
Helix 38	AE2	C	111	113	Right-handed 310
Helix 39	AE3	C	118	133	Right-handed alpha
Helix 40	AE4	C	148	162	Right-handed alpha
Helix 41	AE5	C	174	184	Right-handed alpha
Helix 42	AE6	C	202	214	Right-handed alpha
Helix 43	AE7	C	226	235	Right-handed alpha
Helix 44	AE8	C	235	244	Right-handed alpha
Helix 45	AE9	C	258	272	Right-handed alpha
Helix 46	AF1	C	290	295	Right-handed 310
Helix 47	AF2	C	316	320	Right-handed 310
Helix 48	AF3	C	327	343	Right-handed alpha
Helix 49	AF4	C	347	361	Right-handed alpha
Helix 50	AF5	C	377	382	Right-handed 310
Helix 51	AF6	C	387	394	Right-handed alpha
Helix 52	AF7	D	59	63	Right-handed 310
Helix 53	AF8	D	79	83	Right-handed 310
Helix 54	AF9	D	94	99	Right-handed alpha
Helix 55	AG1	D	111	113	Right-handed 310
Helix 56	AG2	D	118	133	Right-handed alpha
Helix 57	AG3	D	148	162	Right-handed alpha
Helix 58	AG4	D	174	185	Right-handed alpha
Helix 59	AG5	D	202	214	Right-handed alpha
Helix 60	AG6	D	226	235	Right-handed alpha
Helix 61	AG7	D	235	244	Right-handed alpha
Helix 62	AG8	D	258	272	Right-handed alpha
Helix 63	AG9	D	290	295	Right-handed 310
Helix 64	AH1	D	316	320	Right-handed 310
Helix 65	AH2	D	327	343	Right-handed alpha
Helix 66	AH3	D	347	361	Right-handed alpha
Helix 67	AH4	D	377	382	Right-handed 310
Helix 68	AH5	D	387	394	Right-handed alpha
Helix 69	AH6	E	79	83	Right-handed 310
Helix 70	AH7	E	94	99	Right-handed alpha
Helix 71	AH8	E	111	113	Right-handed 310
Helix 72	AH9	E	119	133	Right-handed alpha
Helix 73	AI1	E	148	162	Right-handed alpha
Helix 74	AI2	E	174	185	Right-handed alpha
Helix 75	AI3	E	202	214	Right-handed alpha
Helix 76	AI4	E	226	235	Right-handed alpha
Helix 77	AI5	E	235	244	Right-handed alpha
Helix 78	AI6	E	258	272	Right-handed alpha
Helix 79	AI7	E	291	295	Right-handed 310
Helix 80	AI8	E	316	320	Right-handed 310
Helix 81	AI9	E	327	343	Right-handed alpha
Helix 82	AJ1	E	347	361	Right-handed alpha
Helix 83	AJ2	E	377	382	Right-handed 310
Helix 84	AJ3	E	387	394	Right-handed alpha
Helix 85	AJ4	F	59	63	Right-handed 310
Helix 86	AJ5	F	79	83	Right-handed 310
Helix 87	AJ6	F	94	99	Right-handed alpha
Helix 88	AJ7	F	111	113	Right-handed 310
Helix 89	AJ8	F	119	133	Right-handed alpha
Helix 90	AJ9	F	148	162	Right-handed alpha
Helix 91	AK1	F	174	185	Right-handed alpha
Helix 92	AK2	F	202	214	Right-handed alpha
Helix 93	AK3	F	226	235	Right-handed alpha
Helix 94	AK4	F	235	244	Right-handed alpha
Helix 95	AK5	F	258	272	Right-handed alpha
Helix 96	AK6	F	290	295	Right-handed 310
Helix 97	AK7	F	316	320	Right-handed 310
Helix 98	AK8	F	327	343	Right-handed alpha
Helix 99	AK9	F	347	361	Right-handed alpha
Helix 100	AL1	F	362	364	Right-handed 310
Helix 101	AL2	F	377	382	Right-handed 310
Helix 102	AL3	F	387	394	Right-handed alpha

There are 12 sheets in PDB entry 8STW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	369	374	parallel
Strand 4	A	250	254	parallel
Strand 5	A	276	282	parallel
Strand 6	A	322	326	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	164	170	parallel
Strand 3	A	141	145	parallel
Strand 4	A	217	218	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	104	109	anti-parallel
Strand 3	B	369	374	parallel
Strand 4	B	250	254	parallel
Strand 5	B	276	282	parallel
Strand 6	B	322	326	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	164	170	parallel
Strand 3	B	141	145	parallel
Strand 4	B	217	218	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	92	first strand
Strand 2	C	104	109	anti-parallel
Strand 3	C	369	374	parallel
Strand 4	C	250	254	parallel
Strand 5	C	276	282	parallel
Strand 6	C	322	326	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	164	170	parallel
Strand 3	C	141	145	parallel
Strand 4	C	217	218	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	104	109	anti-parallel
Strand 3	D	369	374	parallel
Strand 4	D	250	254	parallel
Strand 5	D	276	282	parallel
Strand 6	D	322	326	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	191	first strand
Strand 2	D	164	170	parallel
Strand 3	D	141	145	parallel
Strand 4	D	217	218	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	92	first strand
Strand 2	E	104	109	anti-parallel
Strand 3	E	369	374	parallel
Strand 4	E	250	254	parallel
Strand 5	E	276	282	parallel
Strand 6	E	322	326	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	191	first strand
Strand 2	E	164	170	parallel
Strand 3	E	141	145	parallel
Strand 4	E	217	218	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	92	first strand
Strand 2	F	104	109	anti-parallel
Strand 3	F	369	374	parallel
Strand 4	F	250	254	parallel
Strand 5	F	276	282	parallel
Strand 6	F	322	326	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	191	first strand
Strand 2	F	164	170	parallel
Strand 3	F	141	145	parallel
Strand 4	F	217	218	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8STW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8STW