Analysis of interatomic Contacts of Structural Units in PDB entry:
8SUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SUJ entry

There are 4 chains in PDB entry 8SUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6HIS 225
A
 THR 227PRO 407
B
 LYS 1006HIS 1225
B
 THR 1227PRO 1407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8SUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 24Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
45 50Right-handed 310
Helix 4
AA4
A
64 83Right-handed alpha
Helix 5
AA5
A
93 106Right-handed alpha
Helix 6
AA6
A
117 120Right-handed 310
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
130 136Right-handed alpha
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
201 207Right-handed alpha
Helix 12
AB3
A
225 229Right-handed 310
Helix 13
AB4
A
240 252Right-handed alpha
Helix 14
AB5
A
260 275Right-handed alpha
Helix 15
AB6
A
276 300Right-handed alpha
Helix 16
AB7
A
306 308Right-handed 310
Helix 17
AB8
A
319 322Right-handed 310
Helix 18
AB9
A
324 334Right-handed alpha
Helix 19
AC1
A
361 367Right-handed alpha
Helix 20
AC2
A
370 372Right-handed 310
Helix 21
AC3
A
373 388Right-handed alpha
Helix 22
AC4
A
390 403Right-handed alpha
Helix 23
AC5
B
1008 1025Right-handed alpha
Helix 24
AC6
B
1036 1044Right-handed alpha
Helix 25
AC7
B
1045 1050Right-handed 310
Helix 26
AC8
B
1064 1083Right-handed alpha
Helix 27
AC9
B
1093 1106Right-handed alpha
Helix 28
AD1
B
1122 1126Right-handed 310
Helix 29
AD2
B
1130 1136Right-handed alpha
Helix 30
AD3
B
1151 1163Right-handed alpha
Helix 31
AD4
B
1179 1190Right-handed alpha
Helix 32
AD5
B
1201 1207Right-handed alpha
Helix 33
AD6
B
1225 1229Right-handed 310
Helix 34
AD7
B
1240 1252Right-handed alpha
Helix 35
AD8
B
1260 1275Right-handed alpha
Helix 36
AD9
B
1276 1299Right-handed alpha
Helix 37
AE1
B
1306 1308Right-handed 310
Helix 38
AE2
B
1319 1322Right-handed 310
Helix 39
AE3
B
1324 1335Right-handed alpha
Helix 40
AE4
B
1361 1367Right-handed alpha
Helix 41
AE5
B
1370 1372Right-handed 310
Helix 42
AE6
B
1373 1387Right-handed alpha
Helix 43
AE7
B
1390 1403Right-handed alpha
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There are 8 sheets in PDB entry 8SUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
337 338parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
58 59anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
193 197parallel
Strand 5
A
166 169parallel
Strand 6
A
111 115parallel
Strand 7
A
137 141parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
356 360anti-parallel
Strand 4
A
340 341anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1026 1027first strand
Strand 2
B
1337 1338parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1054 1055first strand
Strand 2
B
1058 1059anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1086 1088first strand
Strand 2
B
1234 1238anti-parallel
Strand 3
B
1219 1223anti-parallel
Strand 4
B
1193 1197parallel
Strand 5
B
1166 1169parallel
Strand 6
B
1111 1115parallel
Strand 7
B
1137 1141parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1303 1304first strand
Strand 2
B
1313 1317anti-parallel
Strand 3
B
1356 1360anti-parallel
Strand 4
B
1340 1342anti-parallel
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