Analysis of interatomic Contacts of Structural Units in PDB entry:
8SUX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SUX entry

There are 6 chains in PDB entry 8SUX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 382
B	MET 1	LEU 382
C	MET 1	ALA 384
D	MET 1	LEU 382
E	MET 1	ALA 384
F	MET 1	GLY 383

There are 87 helices in PDB entry 8SUX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	52	Right-handed alpha
Helix 2	AA2	A	53	58	Right-handed 310
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	68	72	Right-handed 310
Helix 5	AA5	A	118	136	Right-handed alpha
Helix 6	AA6	A	153	157	Right-handed 310
Helix 7	AA7	A	173	184	Right-handed 310
Helix 8	AA8	A	192	217	Right-handed alpha
Helix 9	AA9	A	225	251	Right-handed alpha
Helix 10	AB1	A	278	280	Right-handed 310
Helix 11	AB2	A	281	302	Right-handed alpha
Helix 12	AB3	A	327	332	Right-handed alpha
Helix 13	AB4	A	333	342	Right-handed alpha
Helix 14	AB5	A	355	360	Right-handed 310
Helix 15	AB6	A	361	363	Right-handed 310
Helix 16	AB7	B	35	53	Right-handed alpha
Helix 17	AB8	B	54	58	Right-handed 310
Helix 18	AB9	B	68	72	Right-handed 310
Helix 19	AC1	B	118	136	Right-handed alpha
Helix 20	AC2	B	153	157	Right-handed 310
Helix 21	AC3	B	173	184	Right-handed 310
Helix 22	AC4	B	192	217	Right-handed alpha
Helix 23	AC5	B	225	247	Right-handed alpha
Helix 24	AC6	B	278	280	Right-handed 310
Helix 25	AC7	B	281	302	Right-handed alpha
Helix 26	AC8	B	327	332	Right-handed alpha
Helix 27	AC9	B	333	342	Right-handed alpha
Helix 28	AD1	B	361	363	Right-handed 310
Helix 29	AD2	C	34	46	Right-handed alpha
Helix 30	AD3	C	47	52	Right-handed alpha
Helix 31	AD4	C	53	60	Right-handed 310
Helix 32	AD5	C	68	72	Right-handed 310
Helix 33	AD6	C	118	136	Right-handed alpha
Helix 34	AD7	C	180	184	Right-handed 310
Helix 35	AD8	C	193	217	Right-handed alpha
Helix 36	AD9	C	218	221	Right-handed 310
Helix 37	AE1	C	224	251	Right-handed alpha
Helix 38	AE2	C	259	262	Right-handed 310
Helix 39	AE3	C	278	280	Right-handed 310
Helix 40	AE4	C	281	302	Right-handed alpha
Helix 41	AE5	C	327	332	Right-handed alpha
Helix 42	AE6	C	333	342	Right-handed alpha
Helix 43	AE7	C	355	360	Right-handed 310
Helix 44	AE8	C	361	363	Right-handed 310
Helix 45	AE9	D	36	53	Right-handed alpha
Helix 46	AF1	D	54	60	Right-handed 310
Helix 47	AF2	D	68	72	Right-handed 310
Helix 48	AF3	D	118	137	Right-handed alpha
Helix 49	AF4	D	175	181	Right-handed alpha
Helix 50	AF5	D	182	184	Right-handed 310
Helix 51	AF6	D	192	217	Right-handed alpha
Helix 52	AF7	D	226	247	Right-handed alpha
Helix 53	AF8	D	281	302	Right-handed alpha
Helix 54	AF9	D	308	313	Right-handed alpha
Helix 55	AG1	D	329	332	Right-handed 310
Helix 56	AG2	D	333	342	Right-handed alpha
Helix 57	AG3	D	353	359	Right-handed 310
Helix 58	AG4	D	361	363	Right-handed 310
Helix 59	AG5	E	35	46	Right-handed alpha
Helix 60	AG6	E	47	53	Right-handed alpha
Helix 61	AG7	E	62	66	Right-handed 310
Helix 62	AG8	E	68	72	Right-handed 310
Helix 63	AG9	E	118	137	Right-handed alpha
Helix 64	AH1	E	180	184	Right-handed 310
Helix 65	AH2	E	192	215	Right-handed alpha
Helix 66	AH3	E	216	219	Right-handed 310
Helix 67	AH4	E	220	247	Right-handed alpha
Helix 68	AH5	E	259	262	Right-handed 310
Helix 69	AH6	E	278	280	Right-handed 310
Helix 70	AH7	E	281	302	Right-handed alpha
Helix 71	AH8	E	327	332	Right-handed alpha
Helix 72	AH9	E	333	342	Right-handed alpha
Helix 73	AI1	E	355	359	Right-handed 310
Helix 74	AI2	E	361	363	Right-handed 310
Helix 75	AI3	F	36	47	Right-handed alpha
Helix 76	AI4	F	47	53	Right-handed alpha
Helix 77	AI5	F	62	66	Right-handed 310
Helix 78	AI6	F	68	72	Right-handed 310
Helix 79	AI7	F	118	136	Right-handed alpha
Helix 80	AI8	F	175	181	Right-handed alpha
Helix 81	AI9	F	192	217	Right-handed alpha
Helix 82	AJ1	F	225	247	Right-handed alpha
Helix 83	AJ2	F	278	280	Right-handed 310
Helix 84	AJ3	F	281	302	Right-handed alpha
Helix 85	AJ4	F	333	342	Right-handed alpha
Helix 86	AJ5	F	353	360	Right-handed 310
Helix 87	AJ6	F	361	363	Right-handed 310

There are 23 sheets in PDB entry 8SUX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	20	first strand
Strand 2	A	2	11	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	102	109	anti-parallel
Strand 5	A	116	117	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	152	first strand
Strand 2	A	315	320	parallel
Strand 3	A	345	351	parallel
Strand 4	A	25	29	parallel
Strand 5	A	365	370	parallel
Strand 6	A	376	379	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	82	85	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	258	first strand
Strand 2	A	264	268	anti-parallel
Strand 3	A	274	276	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	2	9	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	102	109	anti-parallel
Strand 5	B	116	117	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	315	320	parallel
Strand 3	B	345	351	parallel
Strand 4	B	25	29	parallel
Strand 5	B	365	370	parallel
Strand 6	B	376	379	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	82	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	264	268	anti-parallel
Strand 3	B	274	276	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	89	97	anti-parallel
Strand 4	C	101	109	anti-parallel
Strand 5	C	116	117	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	315	320	parallel
Strand 3	C	345	350	parallel
Strand 4	C	25	29	parallel
Strand 5	C	365	370	parallel
Strand 6	C	376	379	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	84	86	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	258	first strand
Strand 2	C	264	269	anti-parallel
Strand 3	C	273	276	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	19	first strand
Strand 2	D	5	8	anti-parallel
Strand 3	D	89	97	anti-parallel
Strand 4	D	101	110	anti-parallel
Strand 5	D	113	117	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	152	first strand
Strand 2	D	315	320	parallel
Strand 3	D	345	350	parallel
Strand 4	D	25	28	parallel
Strand 5	D	365	370	parallel
Strand 6	D	376	379	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	77	first strand
Strand 2	D	82	85	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	258	first strand
Strand 2	D	264	269	anti-parallel
Strand 3	D	273	276	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	E	3	9	anti-parallel
Strand 3	E	89	95	anti-parallel
Strand 4	E	103	109	anti-parallel
Strand 5	E	116	117	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	152	first strand
Strand 2	E	315	320	parallel
Strand 3	E	345	350	parallel
Strand 4	E	25	29	parallel
Strand 5	E	365	370	parallel
Strand 6	E	376	379	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	258	first strand
Strand 2	E	264	269	anti-parallel
Strand 3	E	273	276	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	F	2	9	anti-parallel
Strand 3	F	89	98	anti-parallel
Strand 4	F	101	109	anti-parallel
Strand 5	F	116	117	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	152	first strand
Strand 2	F	315	320	parallel
Strand 3	F	345	351	parallel
Strand 4	F	25	29	parallel
Strand 5	F	365	369	parallel
Strand 6	F	377	379	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	76	first strand
Strand 2	F	83	85	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	258	first strand
Strand 2	F	264	269	anti-parallel
Strand 3	F	273	276	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SUX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SUX