Analysis of interatomic Contacts of Structural Units in PDB entry:
8SV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SV1 entry

There are 6 chains in PDB entry 8SV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 150ASP 297
B
 ALA 317HIS 404
a
 ALA 150ASP 297
b
 ALA 317HIS 404
C
 VAL 6ASP 193
c
 VAL 6ASP 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8SV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 197Right-handed alpha
Helix 2
AA2
A
207 221Right-handed alpha
Helix 3
AA3
A
222 227Right-handed 310
Helix 4
AA4
A
257 265Right-handed alpha
Helix 5
AA5
A
270 274Right-handed 310
Helix 6
AA6
B
347 361Right-handed alpha
Helix 7
AA7
B
365 376Right-handed alpha
Helix 8
AA8
a
181 197Right-handed alpha
Helix 9
AA9
a
207 221Right-handed alpha
Helix 10
AB1
a
223 227Right-handed 310
Helix 11
AB2
a
257 264Right-handed alpha
Helix 12
AB3
a
270 274Right-handed 310
Helix 13
AB4
b
347 361Right-handed alpha
Helix 14
AB5
b
365 376Right-handed alpha
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There are 12 sheets in PDB entry 8SV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
165 169parallel
Strand 3
A
231 235parallel
Strand 4
A
278 283parallel
Strand 5
B
327 328parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
242 244anti-parallel
Strand 3
A
255 256anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
b
318 319anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 322first strand
Strand 2
a
292 294anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 341first strand
Strand 2
C
34 35anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
199 204first strand
Strand 2
a
164 169parallel
Strand 3
a
230 235parallel
Strand 4
a
279 283parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
243 244first strand
Strand 2
a
255 256anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
340 341first strand
Strand 2
c
34 35anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
169 174anti-parallel
Strand 3
C
161 166anti-parallel
Strand 4
C
185 190anti-parallel
Strand 5
C
148 153anti-parallel
Strand 6
C
137 141anti-parallel
Strand 7
C
97 102anti-parallel
Strand 8
C
84 88anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 46first strand
Strand 2
C
185 190parallel
Strand 3
C
148 153anti-parallel
Strand 4
C
137 141anti-parallel
Strand 5
C
97 102anti-parallel
Strand 6
C
108 111anti-parallel
Strand 7
C
118 121anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
24 25first strand
Strand 2
c
169 174anti-parallel
Strand 3
c
161 166anti-parallel
Strand 4
c
185 190anti-parallel
Strand 5
c
148 153anti-parallel
Strand 6
c
137 141anti-parallel
Strand 7
c
97 102anti-parallel
Strand 8
c
84 88anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
45 46first strand
Strand 2
c
185 190parallel
Strand 3
c
148 153anti-parallel
Strand 4
c
137 141anti-parallel
Strand 5
c
97 102anti-parallel
Strand 6
c
108 111anti-parallel
Strand 7
c
118 121anti-parallel
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