Analysis of interatomic Contacts of Structural Units in PDB entry:
8SVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SVE entry

There are 4 chains in PDB entry 8SVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	VAL 2	PRO 220
I	VAL 2	PRO 220
L	ASP 1	ARG 376
M	ASP 1	ARG 376

There are 36 helices in PDB entry 8SVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	63	66	Right-handed 310
Helix 2	AA2	H	88	92	Right-handed 310
Helix 3	AA3	H	134	136	Right-handed 310
Helix 4	AA4	H	163	165	Right-handed 310
Helix 5	AA5	H	194	196	Right-handed 310
Helix 6	AA6	H	208	211	Right-handed 310
Helix 7	AA7	I	63	67	Right-handed 310
Helix 8	AA8	I	88	92	Right-handed 310
Helix 9	AA9	I	134	136	Right-handed 310
Helix 10	AB1	I	163	165	Right-handed 310
Helix 11	AB2	I	194	196	Right-handed 310
Helix 12	AB3	I	208	211	Right-handed 310
Helix 13	AB4	L	42	60	Right-handed alpha
Helix 14	AB5	L	61	69	Right-handed alpha
Helix 15	AB6	L	77	85	Right-handed alpha
Helix 16	AB7	L	88	104	Right-handed alpha
Helix 17	AB8	L	104	109	Right-handed alpha
Helix 18	AB9	L	112	136	Right-handed alpha
Helix 19	AC1	L	153	165	Right-handed alpha
Helix 20	AC2	L	165	176	Right-handed alpha
Helix 21	AC3	L	176	193	Right-handed alpha
Helix 22	AC4	L	244	248	Right-handed 310
Helix 23	AC5	L	286	292	Right-handed alpha
Helix 24	AC6	L	348	353	Right-handed alpha
Helix 25	AC7	M	46	60	Right-handed alpha
Helix 26	AC8	M	61	67	Right-handed alpha
Helix 27	AC9	M	77	85	Right-handed alpha
Helix 28	AD1	M	88	103	Right-handed alpha
Helix 29	AD2	M	104	108	Right-handed 310
Helix 30	AD3	M	112	136	Right-handed alpha
Helix 31	AD4	M	153	165	Right-handed alpha
Helix 32	AD5	M	165	176	Right-handed alpha
Helix 33	AD6	M	176	193	Right-handed alpha
Helix 34	AD7	M	244	248	Right-handed 310
Helix 35	AD8	M	286	292	Right-handed alpha
Helix 36	AD9	M	348	353	Right-handed alpha

There are 22 sheets in PDB entry 8SVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	93	101	anti-parallel
Strand 4	H	34	41	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	93	101	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	139	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	202	207	anti-parallel
Strand 3	H	212	217	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	69	74	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	114	118	parallel
Strand 3	I	93	101	anti-parallel
Strand 4	I	34	41	anti-parallel
Strand 5	I	48	54	anti-parallel
Strand 6	I	59	61	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	114	118	parallel
Strand 3	I	93	101	anti-parallel
Strand 4	I	109	110	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	127	131	first strand
Strand 2	I	142	152	anti-parallel
Strand 3	I	183	192	anti-parallel
Strand 4	I	170	172	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	139	first strand
Strand 2	I	142	152	anti-parallel
Strand 3	I	183	192	anti-parallel
Strand 4	I	176	177	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	161	first strand
Strand 2	I	202	207	anti-parallel
Strand 3	I	212	217	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	7	first strand
Strand 2	L	19	27	anti-parallel
Strand 3	L	235	240	anti-parallel
Strand 4	L	227	232	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	267	272	parallel
Strand 3	L	249	255	anti-parallel
Strand 4	L	199	203	anti-parallel
Strand 5	L	210	214	anti-parallel
Strand 6	L	218	219	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	267	272	parallel
Strand 3	L	249	255	anti-parallel
Strand 4	L	262	263	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	279	283	first strand
Strand 2	L	294	304	anti-parallel
Strand 3	L	338	347	anti-parallel
Strand 4	L	324	328	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	318	319	first strand
Strand 2	L	310	315	anti-parallel
Strand 3	L	356	362	anti-parallel
Strand 4	L	370	375	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	2	7	first strand
Strand 2	M	19	27	anti-parallel
Strand 3	M	235	240	anti-parallel
Strand 4	M	227	232	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	267	272	parallel
Strand 3	M	249	255	anti-parallel
Strand 4	M	199	203	anti-parallel
Strand 5	M	210	214	anti-parallel
Strand 6	M	218	219	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	267	272	parallel
Strand 3	M	249	255	anti-parallel
Strand 4	M	262	263	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	279	283	first strand
Strand 2	M	294	304	anti-parallel
Strand 3	M	338	347	anti-parallel
Strand 4	M	324	328	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	318	319	first strand
Strand 2	M	310	315	anti-parallel
Strand 3	M	356	362	anti-parallel
Strand 4	M	370	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SVE