Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SWC entry

There are 3 chains in PDB entry 8SWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 138ASP 286
B
 U 1 G 20
C
 C 6 T 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8SWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 199Right-handed alpha
Helix 2
AA2
A
211 220Right-handed alpha
Helix 3
AA3
A
220 228Right-handed alpha
Helix 4
AA4
A
240 251Right-handed alpha
Helix 5
AA5
A
267 282Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8SWC.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
157 163anti-parallel
Strand 3
A
140 149anti-parallel
Strand 4
A
204 209parallel
Strand 5
A
255 260parallel
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