Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SWH entry

There are 3 chains in PDB entry 8SWH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 15TYR 269
H
 GLN 1THR 110
L
 ILE 2ILE 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 8SWH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 75Right-handed 310
Helix 2
AA2
A
96 99Right-handed 310
Helix 3
AA3
A
156 159Right-handed 310
Helix 4
AA4
H
28 30Right-handed 310
Helix 5
AA5
H
73 75Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 8SWH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 245anti-parallel
Strand 3
A
141 146parallel
Strand 4
A
151 155anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 245anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
116 121anti-parallel
Strand 5
A
126 131anti-parallel
Strand 6
A
168 172anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
190 191anti-parallel
Strand 3
A
91 94anti-parallel
Strand 4
A
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
19 23anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
44 51anti-parallel
Strand 3
H
32 40anti-parallel
Strand 4
H
88 96anti-parallel
Strand 5
H
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
44 51anti-parallel
Strand 3
H
32 40anti-parallel
Strand 4
H
88 96anti-parallel
Strand 5
H
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 23first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 23first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
66 67anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 48first strand
Strand 2
L
35 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 48first strand
Strand 2
L
35 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
102 103anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il