Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SWI entry

There are 2 chains in PDB entry 8SWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 82GLY 532
B
 ALA 1GLY 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8SWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 87Right-handed 310
Helix 2
AA2
A
88 96Right-handed alpha
Helix 3
AA3
A
123 126Right-handed 310
Helix 4
AA4
A
155 165Right-handed alpha
Helix 5
AA5
A
169 171Right-handed 310
Helix 6
AA6
A
188 193Right-handed 310
Helix 7
AA7
A
237 244Right-handed alpha
Helix 8
AA8
A
255 263Right-handed alpha
Helix 9
AA9
A
276 280Right-handed 310
Helix 10
AB1
A
291 298Right-handed alpha
Helix 11
AB2
A
336 345Right-handed alpha
Helix 12
AB3
A
346 356Right-handed alpha
Helix 13
AB4
A
370 382Right-handed alpha
Helix 14
AB5
A
385 398Right-handed alpha
Helix 15
AB6
A
411 420Right-handed alpha
Helix 16
AB7
A
421 436Right-handed alpha
Helix 17
AB8
A
440 444Right-handed 310
Helix 18
AB9
A
453 461Right-handed alpha
Helix 19
AC1
A
463 474Right-handed alpha
Helix 20
AC2
A
476 482Right-handed alpha
Helix 21
AC3
A
486 501Right-handed alpha
Helix 22
AC4
A
505 519Right-handed alpha
Helix 23
AC5
A
524 531Right-handed alpha
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There are 5 sheets in PDB entry 8SWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
131 135anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
212 219anti-parallel
Strand 3
A
202 209anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
179 182anti-parallel
Strand 3
A
173 176anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
230 231parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
286 290anti-parallel
Strand 3
A
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il