Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SWJ entry

There are 4 chains in PDB entry 8SWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1482	LEU 1602
B	GLY 1482	TYR 1605
C	GLY 1482	GLU 1606
D	GLY 1482	TYR 1605

There are 9 helices in PDB entry 8SWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1589	1595	Right-handed alpha
Helix 2	AA2	A	1596	1601	Right-handed alpha
Helix 3	AA3	B	1589	1595	Right-handed alpha
Helix 4	AA4	B	1596	1601	Right-handed alpha
Helix 5	AA5	C	1589	1595	Right-handed alpha
Helix 6	AA6	C	1596	1601	Right-handed alpha
Helix 7	AA7	C	1602	1606	Right-handed 310
Helix 8	AA8	D	1589	1595	Right-handed alpha
Helix 9	AA9	D	1596	1601	Right-handed alpha

There are 8 sheets in PDB entry 8SWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1524	1528	first strand
Strand 2	A	1514	1519	anti-parallel
Strand 3	A	1501	1511	anti-parallel
Strand 4	A	1490	1494	anti-parallel
Strand 5	A	1532	1533	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1577	1582	first strand
Strand 2	A	1567	1574	anti-parallel
Strand 3	A	1553	1564	anti-parallel
Strand 4	A	1543	1547	anti-parallel
Strand 5	A	1586	1587	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1524	1528	first strand
Strand 2	B	1514	1519	anti-parallel
Strand 3	B	1501	1511	anti-parallel
Strand 4	B	1490	1494	anti-parallel
Strand 5	B	1532	1533	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1577	1582	first strand
Strand 2	B	1568	1574	anti-parallel
Strand 3	B	1553	1563	anti-parallel
Strand 4	B	1543	1547	anti-parallel
Strand 5	B	1586	1587	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1524	1528	first strand
Strand 2	C	1514	1519	anti-parallel
Strand 3	C	1501	1511	anti-parallel
Strand 4	C	1490	1494	anti-parallel
Strand 5	C	1532	1533	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1577	1582	first strand
Strand 2	C	1567	1574	anti-parallel
Strand 3	C	1554	1564	anti-parallel
Strand 4	C	1543	1546	anti-parallel
Strand 5	C	1586	1587	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1524	1528	first strand
Strand 2	D	1514	1519	anti-parallel
Strand 3	D	1501	1511	anti-parallel
Strand 4	D	1490	1494	anti-parallel
Strand 5	D	1532	1533	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1577	1582	first strand
Strand 2	D	1568	1574	anti-parallel
Strand 3	D	1552	1563	anti-parallel
Strand 4	D	1543	1548	anti-parallel
Strand 5	D	1586	1587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWJ