Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SWR entry

There are 5 chains in PDB entry 8SWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ILE 306
B
 ASP 5ILE 306
C
 ASP 5ILE 306
D
 ASP 5ILE 306
E
 ASP 5GLU 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8SWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 28Right-handed alpha
Helix 2
AA2
A
44 51Right-handed 310
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
104 117Right-handed alpha
Helix 5
AA5
A
150 155Right-handed alpha
Helix 6
AA6
A
180 194Right-handed alpha
Helix 7
AA7
A
215 225Right-handed alpha
Helix 8
AA8
A
234 244Right-handed alpha
Helix 9
AA9
A
280 291Right-handed alpha
Helix 10
AB1
A
291 304Right-handed alpha
Helix 11
AB2
B
6 28Right-handed alpha
Helix 12
AB3
B
44 51Right-handed 310
Helix 13
AB4
B
98 102Right-handed 310
Helix 14
AB5
B
104 117Right-handed alpha
Helix 15
AB6
B
151 155Right-handed alpha
Helix 16
AB7
B
180 194Right-handed alpha
Helix 17
AB8
B
215 225Right-handed alpha
Helix 18
AB9
B
234 244Right-handed alpha
Helix 19
AC1
B
280 304Right-handed alpha
Helix 20
AC2
C
6 28Right-handed alpha
Helix 21
AC3
C
44 51Right-handed 310
Helix 22
AC4
C
63 65Right-handed 310
Helix 23
AC5
C
109 117Right-handed alpha
Helix 24
AC6
C
151 156Right-handed alpha
Helix 25
AC7
C
180 195Right-handed alpha
Helix 26
AC8
C
215 225Right-handed alpha
Helix 27
AC9
C
234 244Right-handed alpha
Helix 28
AD1
C
290 303Right-handed alpha
Helix 29
AD2
C
304 306Right-handed 310
Helix 30
AD3
D
6 28Right-handed alpha
Helix 31
AD4
D
44 51Right-handed 310
Helix 32
AD5
D
63 65Right-handed 310
Helix 33
AD6
D
98 102Right-handed 310
Helix 34
AD7
D
104 117Right-handed alpha
Helix 35
AD8
D
150 155Right-handed alpha
Helix 36
AD9
D
180 195Right-handed alpha
Helix 37
AE1
D
215 225Right-handed alpha
Helix 38
AE2
D
234 244Right-handed alpha
Helix 39
AE3
D
280 291Right-handed alpha
Helix 40
AE4
D
291 303Right-handed alpha
Helix 41
AE5
D
304 306Right-handed 310
Helix 42
AE6
E
6 28Right-handed alpha
Helix 43
AE7
E
43 51Right-handed 310
Helix 44
AE8
E
63 65Right-handed 310
Helix 45
AE9
E
98 102Right-handed 310
Helix 46
AF1
E
104 117Right-handed alpha
Helix 47
AF2
E
180 194Right-handed alpha
Helix 48
AF3
E
215 225Right-handed alpha
Helix 49
AF4
E
234 244Right-handed alpha
Helix 50
AF5
E
280 304Right-handed alpha
Helix 51
AF6
F
6 28Right-handed alpha
Helix 52
AF7
F
44 51Right-handed 310
Helix 53
AF8
F
63 65Right-handed 310
Helix 54
AF9
F
106 117Right-handed alpha
Helix 55
AG1
F
151 156Right-handed alpha
Helix 56
AG2
F
180 195Right-handed alpha
Helix 57
AG3
F
215 225Right-handed alpha
Helix 58
AG4
F
234 244Right-handed alpha
Helix 59
AG5
F
285 304Right-handed alpha
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There are 6 sheets in PDB entry 8SWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
36 40parallel
Strand 5
A
123 132parallel
Strand 6
A
247 257parallel
Strand 7
A
142 149anti-parallel
Strand 8
A
200 207parallel
Strand 9
A
229 231parallel
Strand 10
A
123 132anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
79 85anti-parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
36 40parallel
Strand 5
B
123 132parallel
Strand 6
B
247 257parallel
Strand 7
B
142 150anti-parallel
Strand 8
B
200 207parallel
Strand 9
B
229 231parallel
Strand 10
B
123 132anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 61first strand
Strand 2
C
79 85anti-parallel
Strand 3
C
88 93anti-parallel
Strand 4
C
36 39parallel
Strand 5
C
123 132parallel
Strand 6
C
247 257parallel
Strand 7
C
142 150anti-parallel
Strand 8
C
200 207parallel
Strand 9
C
229 231parallel
Strand 10
C
123 132anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 61first strand
Strand 2
D
79 85anti-parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
36 39parallel
Strand 5
D
123 132parallel
Strand 6
D
247 257parallel
Strand 7
D
142 149anti-parallel
Strand 8
D
200 207parallel
Strand 9
D
229 231parallel
Strand 10
D
123 132anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 61first strand
Strand 2
E
79 85anti-parallel
Strand 3
E
88 94anti-parallel
Strand 4
E
36 40parallel
Strand 5
E
123 132parallel
Strand 6
E
247 257parallel
Strand 7
E
142 150anti-parallel
Strand 8
E
200 207parallel
Strand 9
E
229 231parallel
Strand 10
E
123 132anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
58 61first strand
Strand 2
F
79 85anti-parallel
Strand 3
F
88 93anti-parallel
Strand 4
F
36 39parallel
Strand 5
F
123 132parallel
Strand 6
F
247 257parallel
Strand 7
F
142 150anti-parallel
Strand 8
F
200 207parallel
Strand 9
F
229 231parallel
Strand 10
F
123 132anti-parallel
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