Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SWU entry

There are 3 chains in PDB entry 8SWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ILE 272
B
 MET 1ILE 272
C
 SER 0ILE 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8SWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 18Right-handed alpha
Helix 2
AA2
A
32 39Right-handed 310
Helix 3
AA3
A
48 50Right-handed 310
Helix 4
AA4
A
83 87Right-handed 310
Helix 5
AA5
A
89 103Right-handed alpha
Helix 6
AA6
A
161 176Right-handed alpha
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
213 224Right-handed alpha
Helix 9
AA9
A
246 257Right-handed alpha
Helix 10
AB1
A
257 272Right-handed alpha
Helix 11
AB2
B
2 16Right-handed alpha
Helix 12
AB3
B
32 37Right-handed alpha
Helix 13
AB4
B
48 50Right-handed 310
Helix 14
AB5
B
83 87Right-handed 310
Helix 15
AB6
B
89 104Right-handed alpha
Helix 16
AB7
B
161 176Right-handed alpha
Helix 17
AB8
B
194 205Right-handed alpha
Helix 18
AB9
B
213 223Right-handed alpha
Helix 19
AC1
B
246 257Right-handed alpha
Helix 20
AC2
B
257 272Right-handed alpha
Helix 21
AC3
C
2 17Right-handed alpha
Helix 22
AC4
C
32 38Right-handed alpha
Helix 23
AC5
C
48 50Right-handed 310
Helix 24
AC6
C
83 87Right-handed 310
Helix 25
AC7
C
89 103Right-handed alpha
Helix 26
AC8
C
161 176Right-handed alpha
Helix 27
AC9
C
194 204Right-handed alpha
Helix 28
AD1
C
213 223Right-handed alpha
Helix 29
AD2
C
246 257Right-handed alpha
Helix 30
AD3
C
257 272Right-handed alpha
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There are 3 sheets in PDB entry 8SWU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
73 79anti-parallel
Strand 4
A
24 28parallel
Strand 5
A
107 116parallel
Strand 6
A
226 236parallel
Strand 7
A
126 134anti-parallel
Strand 8
A
179 186parallel
Strand 9
A
208 210parallel
Strand 10
A
107 116anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
24 27parallel
Strand 5
B
107 116parallel
Strand 6
B
226 236parallel
Strand 7
B
126 135anti-parallel
Strand 8
B
180 187parallel
Strand 9
B
208 210parallel
Strand 10
B
107 116anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 46first strand
Strand 2
C
64 70anti-parallel
Strand 3
C
73 79anti-parallel
Strand 4
C
24 28parallel
Strand 5
C
107 116parallel
Strand 6
C
226 236parallel
Strand 7
C
126 134anti-parallel
Strand 8
C
180 186parallel
Strand 9
C
208 210parallel
Strand 10
C
107 116anti-parallel
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