Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SWV entry

There are 8 chains in PDB entry 8SWV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	ARG 504
B	GLY 521	ASP 664
C	GLY 521	ASP 664
E	ASN 33	ARG 504
D	GLY 521	ASP 664
F	LEU 34	ARG 504
H	UNK 2	UNK 123
L	UNK 2	UNK 106

There are 39 helices in PDB entry 8SWV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	73	Right-handed alpha
Helix 2	AA2	A	98	116	Right-handed alpha
Helix 3	AA3	A	335	354	Right-handed alpha
Helix 4	AA4	A	368	373	Right-handed alpha
Helix 5	AA5	A	474	479	Right-handed 310
Helix 6	AA6	B	529	534	Right-handed alpha
Helix 7	AA7	B	536	542	Right-handed alpha
Helix 8	AA8	B	573	596	Right-handed alpha
Helix 9	AA9	B	618	622	Right-handed 310
Helix 10	AB1	B	627	635	Right-handed alpha
Helix 11	AB2	B	638	664	Right-handed alpha
Helix 12	AB3	C	529	534	Right-handed alpha
Helix 13	AB4	C	536	543	Right-handed alpha
Helix 14	AB5	C	573	596	Right-handed alpha
Helix 15	AB6	C	611	615	Right-handed 310
Helix 16	AB7	C	627	635	Right-handed alpha
Helix 17	AB8	C	638	664	Right-handed alpha
Helix 18	AB9	E	67	73	Right-handed alpha
Helix 19	AC1	E	98	117	Right-handed alpha
Helix 20	AC2	E	139	143	Right-handed 310
Helix 21	AC3	E	335	350	Right-handed alpha
Helix 22	AC4	E	368	373	Right-handed alpha
Helix 23	AC5	E	387	390	Right-handed 310
Helix 24	AC6	E	425	429	Right-handed 310
Helix 25	AC7	E	475	484	Right-handed alpha
Helix 26	AC8	D	529	534	Right-handed alpha
Helix 27	AC9	D	572	596	Right-handed alpha
Helix 28	AD1	D	618	622	Right-handed 310
Helix 29	AD2	D	627	635	Right-handed alpha
Helix 30	AD3	D	638	662	Right-handed alpha
Helix 31	AD4	F	67	73	Right-handed alpha
Helix 32	AD5	F	98	117	Right-handed alpha
Helix 33	AD6	F	122	126	Right-handed 310
Helix 34	AD7	F	335	354	Right-handed alpha
Helix 35	AD8	F	425	429	Right-handed 310
Helix 36	AD9	F	475	480	Right-handed alpha
Helix 37	AE1	H	63	68	Right-handed alpha
Helix 38	AE2	H	76	78	Right-handed 310
Helix 39	AE3	H	89	93	Right-handed 310

There are 34 sheets in PDB entry 8SWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	146	153	anti-parallel
Strand 3	A	162	169	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	191	193	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	284	302	anti-parallel
Strand 4	A	329	334	anti-parallel
Strand 5	A	413	420	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	284	302	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	312	first strand
Strand 2	A	315	320	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	609	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	494	499	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	85	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	216	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	169	first strand
Strand 2	E	146	154	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	173	175	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	433	435	parallel
Strand 3	E	423	424	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	441	454	anti-parallel
Strand 3	E	284	302	anti-parallel
Strand 4	E	271	273	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	441	454	anti-parallel
Strand 3	E	284	302	anti-parallel
Strand 4	E	329	334	anti-parallel
Strand 5	E	413	420	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	374	378	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	312	first strand
Strand 2	E	315	320	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	609	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	F	494	499	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	83	85	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	53	56	parallel
Strand 3	F	216	218	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	236	239	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	169	first strand
Strand 2	F	146	154	anti-parallel
Strand 3	F	129	133	anti-parallel
Strand 4	F	190	193	anti-parallel
Strand 5	F	173	175	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	201	203	first strand
Strand 2	F	433	435	parallel
Strand 3	F	423	424	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	441	456	anti-parallel
Strand 3	F	284	302	anti-parallel
Strand 4	F	329	334	anti-parallel
Strand 5	F	413	420	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	302	anti-parallel
Strand 3	F	441	456	anti-parallel
Strand 4	F	465	470	anti-parallel
Strand 5	F	358	361	parallel
Strand 6	F	393	395	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	312	first strand
Strand 2	F	315	320	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	121	122	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	47	54	anti-parallel
Strand 3	H	35	41	anti-parallel
Strand 4	H	95	100	anti-parallel
Strand 5	H	113	118	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	18	23	anti-parallel
Strand 3	L	68	73	anti-parallel
Strand 4	L	60	65	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	46	first strand
Strand 2	L	32	36	anti-parallel
Strand 3	L	83	90	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	46	first strand
Strand 2	L	32	36	anti-parallel
Strand 3	L	83	90	anti-parallel
Strand 4	L	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SWV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWV