Analysis of interatomic Contacts of Structural Units in PDB entry:
8SWZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SWZ entry

There are 3 chains in PDB entry 8SWZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 316ILE 571
B
 SER 316GLN 570
C
 SER 316GLN 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8SWZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
316 331Right-handed alpha
Helix 2
AA2
A
334 357Right-handed alpha
Helix 3
AA3
A
371 377Right-handed alpha
Helix 4
AA4
A
389 401Right-handed alpha
Helix 5
AA5
A
421 426Right-handed alpha
Helix 6
AA6
A
427 431Right-handed 310
Helix 7
AA7
A
441 443Right-handed 310
Helix 8
AA8
A
444 452Right-handed alpha
Helix 9
AA9
A
481 486Right-handed alpha
Helix 10
AB1
A
552 554Right-handed 310
Helix 11
AB2
A
566 570Right-handed 310
Helix 12
AB3
B
317 328Right-handed alpha
Helix 13
AB4
B
334 355Right-handed alpha
Helix 14
AB5
B
370 377Right-handed alpha
Helix 15
AB6
B
389 400Right-handed alpha
Helix 16
AB7
B
401 403Right-handed 310
Helix 17
AB8
B
421 426Right-handed alpha
Helix 18
AB9
B
427 431Right-handed 310
Helix 19
AC1
B
441 443Right-handed 310
Helix 20
AC2
B
444 452Right-handed alpha
Helix 21
AC3
B
481 486Right-handed alpha
Helix 22
AC4
B
552 554Right-handed 310
Helix 23
AC5
C
317 328Right-handed alpha
Helix 24
AC6
C
334 355Right-handed alpha
Helix 25
AC7
C
371 377Right-handed alpha
Helix 26
AC8
C
389 400Right-handed alpha
Helix 27
AC9
C
421 426Right-handed alpha
Helix 28
AD1
C
427 431Right-handed 310
Helix 29
AD2
C
443 452Right-handed alpha
Helix 30
AD3
C
481 486Right-handed alpha
Helix 31
AD4
C
552 554Right-handed 310
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There are 6 sheets in PDB entry 8SWZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 385first strand
Strand 2
A
410 419anti-parallel
Strand 3
A
556 565anti-parallel
Strand 4
A
498 506anti-parallel
Strand 5
A
433 439anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
547 550anti-parallel
Strand 3
A
529 532anti-parallel
Strand 4
A
510 513parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 385first strand
Strand 2
B
410 419anti-parallel
Strand 3
B
556 565anti-parallel
Strand 4
B
498 506anti-parallel
Strand 5
B
433 439anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 478first strand
Strand 2
B
547 550anti-parallel
Strand 3
B
529 532anti-parallel
Strand 4
B
510 513parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
381 385first strand
Strand 2
C
410 418anti-parallel
Strand 3
C
556 565anti-parallel
Strand 4
C
498 506anti-parallel
Strand 5
C
433 439anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
476 478first strand
Strand 2
C
547 550anti-parallel
Strand 3
C
529 532anti-parallel
Strand 4
C
510 513parallel
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