Analysis of interatomic Contacts of Structural Units in PDB entry:
8SX1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SX1 entry

There are 5 chains in PDB entry 8SX1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 242	GLY 568
B	SER 242	GLY 568
C	SER 242	GLY 568
D	SER 242	GLY 568
E	SER 242	ALA 274

There are 93 helices in PDB entry 8SX1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	242	256	Right-handed alpha
Helix 2	AA2	A	260	279	Right-handed alpha
Helix 3	AA3	A	280	282	Right-handed 310
Helix 4	AA4	A	290	311	Right-handed alpha
Helix 5	AA5	A	313	328	Right-handed alpha
Helix 6	AA6	A	339	360	Right-handed alpha
Helix 7	AA7	A	369	379	Right-handed alpha
Helix 8	AA8	A	389	400	Right-handed alpha
Helix 9	AA9	A	419	426	Right-handed alpha
Helix 10	AB1	A	444	452	Right-handed alpha
Helix 11	AB2	A	482	489	Right-handed alpha
Helix 12	AB3	A	552	556	Right-handed 310
Helix 13	AB4	B	243	256	Right-handed alpha
Helix 14	AB5	B	260	280	Right-handed alpha
Helix 15	AB6	B	290	311	Right-handed alpha
Helix 16	AB7	B	313	328	Right-handed alpha
Helix 17	AB8	B	339	360	Right-handed alpha
Helix 18	AB9	B	369	379	Right-handed alpha
Helix 19	AC1	B	389	400	Right-handed alpha
Helix 20	AC2	B	419	426	Right-handed alpha
Helix 21	AC3	B	444	452	Right-handed alpha
Helix 22	AC4	B	482	489	Right-handed alpha
Helix 23	AC5	B	552	556	Right-handed 310
Helix 24	AC6	C	243	256	Right-handed alpha
Helix 25	AC7	C	260	279	Right-handed alpha
Helix 26	AC8	C	280	282	Right-handed 310
Helix 27	AC9	C	290	311	Right-handed alpha
Helix 28	AD1	C	313	328	Right-handed alpha
Helix 29	AD2	C	339	360	Right-handed alpha
Helix 30	AD3	C	369	379	Right-handed alpha
Helix 31	AD4	C	389	400	Right-handed alpha
Helix 32	AD5	C	419	426	Right-handed alpha
Helix 33	AD6	C	444	452	Right-handed alpha
Helix 34	AD7	C	482	489	Right-handed alpha
Helix 35	AD8	C	552	556	Right-handed 310
Helix 36	AD9	D	243	256	Right-handed alpha
Helix 37	AE1	D	260	279	Right-handed alpha
Helix 38	AE2	D	280	282	Right-handed 310
Helix 39	AE3	D	290	311	Right-handed alpha
Helix 40	AE4	D	313	328	Right-handed alpha
Helix 41	AE5	D	339	360	Right-handed alpha
Helix 42	AE6	D	369	379	Right-handed alpha
Helix 43	AE7	D	389	400	Right-handed alpha
Helix 44	AE8	D	419	426	Right-handed alpha
Helix 45	AE9	D	444	452	Right-handed alpha
Helix 46	AF1	D	482	489	Right-handed alpha
Helix 47	AF2	D	552	556	Right-handed 310
Helix 48	AF3	E	243	256	Right-handed alpha
Helix 49	AF4	E	260	280	Right-handed alpha
Helix 50	AF5	E	290	311	Right-handed alpha
Helix 51	AF6	E	313	328	Right-handed alpha
Helix 52	AF7	E	339	360	Right-handed alpha
Helix 53	AF8	E	369	379	Right-handed alpha
Helix 54	AF9	E	389	400	Right-handed alpha
Helix 55	AG1	E	419	426	Right-handed alpha
Helix 56	AG2	E	444	452	Right-handed alpha
Helix 57	AG3	E	482	489	Right-handed alpha
Helix 58	AG4	E	552	556	Right-handed 310
Helix 59	AG5	F	243	256	Right-handed alpha
Helix 60	AG6	F	260	278	Right-handed alpha
Helix 61	AG7	F	290	311	Right-handed alpha
Helix 62	AG8	F	313	328	Right-handed alpha
Helix 63	AG9	F	339	360	Right-handed alpha
Helix 64	AH1	F	369	379	Right-handed alpha
Helix 65	AH2	F	389	400	Right-handed alpha
Helix 66	AH3	F	419	426	Right-handed alpha
Helix 67	AH4	F	444	452	Right-handed alpha
Helix 68	AH5	F	482	489	Right-handed alpha
Helix 69	AH6	F	552	556	Right-handed 310
Helix 70	AH7	G	243	256	Right-handed alpha
Helix 71	AH8	G	260	279	Right-handed alpha
Helix 72	AH9	G	280	282	Right-handed 310
Helix 73	AI1	G	290	311	Right-handed alpha
Helix 74	AI2	G	313	328	Right-handed alpha
Helix 75	AI3	G	339	360	Right-handed alpha
Helix 76	AI4	G	369	379	Right-handed alpha
Helix 77	AI5	G	389	400	Right-handed alpha
Helix 78	AI6	G	419	426	Right-handed alpha
Helix 79	AI7	G	444	452	Right-handed alpha
Helix 80	AI8	G	482	489	Right-handed alpha
Helix 81	AI9	G	552	556	Right-handed 310
Helix 82	AJ1	H	243	256	Right-handed alpha
Helix 83	AJ2	H	260	279	Right-handed alpha
Helix 84	AJ3	H	280	282	Right-handed 310
Helix 85	AJ4	H	290	311	Right-handed alpha
Helix 86	AJ5	H	313	328	Right-handed alpha
Helix 87	AJ6	H	339	360	Right-handed alpha
Helix 88	AJ7	H	369	379	Right-handed alpha
Helix 89	AJ8	H	389	400	Right-handed alpha
Helix 90	AJ9	H	419	426	Right-handed alpha
Helix 91	AK1	H	444	452	Right-handed alpha
Helix 92	AK2	H	482	489	Right-handed alpha
Helix 93	AK3	H	552	556	Right-handed 310

There are 16 sheets in PDB entry 8SX1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	410	416	anti-parallel
Strand 3	A	558	565	anti-parallel
Strand 4	A	498	506	anti-parallel
Strand 5	A	433	439	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	478	first strand
Strand 2	A	547	550	anti-parallel
Strand 3	A	529	532	anti-parallel
Strand 4	A	510	513	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	410	416	anti-parallel
Strand 3	B	558	565	anti-parallel
Strand 4	B	498	505	anti-parallel
Strand 5	B	434	439	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	478	first strand
Strand 2	B	547	550	anti-parallel
Strand 3	B	529	532	anti-parallel
Strand 4	B	510	511	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	384	first strand
Strand 2	C	410	416	anti-parallel
Strand 3	C	558	565	anti-parallel
Strand 4	C	498	506	anti-parallel
Strand 5	C	433	439	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	478	first strand
Strand 2	C	547	550	anti-parallel
Strand 3	C	529	532	anti-parallel
Strand 4	C	510	513	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	384	first strand
Strand 2	D	410	416	anti-parallel
Strand 3	D	558	565	anti-parallel
Strand 4	D	498	506	anti-parallel
Strand 5	D	433	439	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	478	first strand
Strand 2	D	547	550	anti-parallel
Strand 3	D	529	532	anti-parallel
Strand 4	D	510	513	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	383	384	first strand
Strand 2	E	410	416	anti-parallel
Strand 3	E	558	565	anti-parallel
Strand 4	E	498	506	anti-parallel
Strand 5	E	433	439	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	476	478	first strand
Strand 2	E	547	550	anti-parallel
Strand 3	E	529	532	anti-parallel
Strand 4	E	510	513	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	383	384	first strand
Strand 2	F	410	416	anti-parallel
Strand 3	F	558	565	anti-parallel
Strand 4	F	498	506	anti-parallel
Strand 5	F	433	439	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	476	478	first strand
Strand 2	F	547	550	anti-parallel
Strand 3	F	530	532	anti-parallel
Strand 4	F	511	513	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	383	384	first strand
Strand 2	G	410	416	anti-parallel
Strand 3	G	558	565	anti-parallel
Strand 4	G	498	506	anti-parallel
Strand 5	G	433	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	476	478	first strand
Strand 2	G	547	550	anti-parallel
Strand 3	G	529	532	anti-parallel
Strand 4	G	510	511	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	383	384	first strand
Strand 2	H	410	416	anti-parallel
Strand 3	H	558	565	anti-parallel
Strand 4	H	498	506	anti-parallel
Strand 5	H	433	439	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	476	478	first strand
Strand 2	H	547	550	anti-parallel
Strand 3	H	530	532	anti-parallel
Strand 4	H	511	513	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SX1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SX1