Analysis of interatomic Contacts of Structural Units in PDB entry:
8SXE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SXE entry

There are 6 chains in PDB entry 8SXE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 38	ASN 436
B	SER 38	ASN 436
C	LYS 44	TYR 183
D	UNK 63	UNK 69
E	SER 193	ASN 436
F	TYR 418	ASN 436

There are 34 helices in PDB entry 8SXE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	60	Right-handed alpha
Helix 2	AA2	A	65	80	Right-handed alpha
Helix 3	AA3	A	89	101	Right-handed alpha
Helix 4	AA4	A	127	133	Right-handed 310
Helix 5	AA5	A	152	161	Right-handed alpha
Helix 6	AA6	A	214	230	Right-handed alpha
Helix 7	AA7	A	248	259	Right-handed alpha
Helix 8	AA8	A	301	314	Right-handed alpha
Helix 9	AA9	A	417	435	Right-handed alpha
Helix 10	AB1	B	42	59	Right-handed alpha
Helix 11	AB2	B	65	82	Right-handed alpha
Helix 12	AB3	B	89	98	Right-handed alpha
Helix 13	AB4	B	127	132	Right-handed alpha
Helix 14	AB5	B	152	161	Right-handed alpha
Helix 15	AB6	B	214	230	Right-handed alpha
Helix 16	AB7	B	248	259	Right-handed alpha
Helix 17	AB8	B	272	276	Right-handed 310
Helix 18	AB9	B	301	314	Right-handed alpha
Helix 19	AC1	B	356	361	Right-handed alpha
Helix 20	AC2	B	417	434	Right-handed alpha
Helix 21	AC3	C	49	65	Right-handed alpha
Helix 22	AC4	C	67	83	Right-handed alpha
Helix 23	AC5	C	84	99	Right-handed alpha
Helix 24	AC6	C	101	115	Right-handed alpha
Helix 25	AC7	C	118	132	Right-handed alpha
Helix 26	AC8	C	135	148	Right-handed alpha
Helix 27	AC9	C	154	162	Right-handed alpha
Helix 28	AD1	C	165	182	Right-handed alpha
Helix 29	AD2	E	214	230	Right-handed alpha
Helix 30	AD3	E	248	260	Right-handed alpha
Helix 31	AD4	E	302	315	Right-handed alpha
Helix 32	AD5	E	412	417	Right-handed alpha
Helix 33	AD6	E	417	434	Right-handed alpha
Helix 34	AD7	F	419	435	Right-handed alpha

There are 14 sheets in PDB entry 8SXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	341	350	anti-parallel
Strand 3	A	267	269	anti-parallel
Strand 4	A	277	278	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	341	350	anti-parallel
Strand 3	A	330	335	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	187	189	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	114	first strand
Strand 2	A	117	123	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	140	143	anti-parallel
Strand 3	A	167	172	anti-parallel
Strand 4	A	180	185	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	200	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	236	240	parallel
Strand 4	A	293	296	parallel
Strand 5	A	318	321	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	E	373	375	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	341	350	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	278	280	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	341	350	anti-parallel
Strand 3	B	329	335	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	118	122	anti-parallel
Strand 3	B	139	143	anti-parallel
Strand 4	B	146	147	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	118	122	anti-parallel
Strand 3	B	139	143	anti-parallel
Strand 4	B	167	173	anti-parallel
Strand 5	B	180	185	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	236	241	parallel
Strand 4	B	295	296	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	203	204	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	239	first strand
Strand 2	E	292	294	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SXE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SXE