Analysis of interatomic Contacts of Structural Units in PDB entry:
8SXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SXF entry

There are 5 chains in PDB entry 8SXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 38	ASN 436
B	SER 38	ASN 436
C	LYS 44	PRO 575
D	UNK 64	UNK 69
E	SER 193	ASN 436

There are 59 helices in PDB entry 8SXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	60	Right-handed alpha
Helix 2	AA2	A	65	82	Right-handed alpha
Helix 3	AA3	A	89	101	Right-handed alpha
Helix 4	AA4	A	127	132	Right-handed alpha
Helix 5	AA5	A	152	161	Right-handed alpha
Helix 6	AA6	A	214	230	Right-handed alpha
Helix 7	AA7	A	248	259	Right-handed alpha
Helix 8	AA8	A	301	314	Right-handed alpha
Helix 9	AA9	A	336	340	Right-handed 310
Helix 10	AB1	A	412	417	Right-handed alpha
Helix 11	AB2	A	417	435	Right-handed alpha
Helix 12	AB3	B	42	59	Right-handed alpha
Helix 13	AB4	B	65	80	Right-handed alpha
Helix 14	AB5	B	89	98	Right-handed alpha
Helix 15	AB6	B	127	132	Right-handed alpha
Helix 16	AB7	B	152	161	Right-handed alpha
Helix 17	AB8	B	214	231	Right-handed alpha
Helix 18	AB9	B	248	260	Right-handed alpha
Helix 19	AC1	B	272	276	Right-handed 310
Helix 20	AC2	B	301	314	Right-handed alpha
Helix 21	AC3	B	412	417	Right-handed alpha
Helix 22	AC4	B	417	435	Right-handed alpha
Helix 23	AC5	C	49	65	Right-handed alpha
Helix 24	AC6	C	67	83	Right-handed alpha
Helix 25	AC7	C	84	99	Right-handed alpha
Helix 26	AC8	C	100	115	Right-handed alpha
Helix 27	AC9	C	118	132	Right-handed alpha
Helix 28	AD1	C	135	148	Right-handed alpha
Helix 29	AD2	C	153	164	Right-handed alpha
Helix 30	AD3	C	165	183	Right-handed alpha
Helix 31	AD4	C	187	201	Right-handed alpha
Helix 32	AD5	C	203	213	Right-handed alpha
Helix 33	AD6	C	213	219	Right-handed alpha
Helix 34	AD7	C	220	234	Right-handed alpha
Helix 35	AD8	C	235	250	Right-handed alpha
Helix 36	AD9	C	253	268	Right-handed alpha
Helix 37	AE1	C	270	284	Right-handed alpha
Helix 38	AE2	C	287	301	Right-handed alpha
Helix 39	AE3	C	303	318	Right-handed alpha
Helix 40	AE4	C	320	336	Right-handed alpha
Helix 41	AE5	C	337	348	Right-handed alpha
Helix 42	AE6	C	353	368	Right-handed alpha
Helix 43	AE7	C	370	385	Right-handed alpha
Helix 44	AE8	C	385	404	Right-handed alpha
Helix 45	AE9	C	406	420	Right-handed alpha
Helix 46	AF1	C	423	438	Right-handed alpha
Helix 47	AF2	C	439	454	Right-handed alpha
Helix 48	AF3	C	458	472	Right-handed alpha
Helix 49	AF4	C	475	489	Right-handed alpha
Helix 50	AF5	C	492	507	Right-handed alpha
Helix 51	AF6	C	509	523	Right-handed alpha
Helix 52	AF7	C	525	540	Right-handed alpha
Helix 53	AF8	C	541	556	Right-handed alpha
Helix 54	AF9	C	559	570	Right-handed alpha
Helix 55	AG1	E	214	230	Right-handed alpha
Helix 56	AG2	E	248	260	Right-handed alpha
Helix 57	AG3	E	302	314	Right-handed alpha
Helix 58	AG4	E	412	417	Right-handed alpha
Helix 59	AG5	E	417	434	Right-handed alpha

There are 14 sheets in PDB entry 8SXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	187	189	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	114	first strand
Strand 2	A	117	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	167	173	anti-parallel
Strand 4	A	180	185	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	200	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	236	240	parallel
Strand 4	A	292	296	parallel
Strand 5	A	318	321	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	264	269	anti-parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	330	333	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	E	372	375	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	340	348	anti-parallel
Strand 3	B	267	270	anti-parallel
Strand 4	B	277	278	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	340	348	anti-parallel
Strand 3	B	329	337	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	162	163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	114	first strand
Strand 2	B	117	123	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	146	147	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	182	186	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	236	240	parallel
Strand 4	B	292	295	parallel
Strand 5	B	319	320	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	198	first strand
Strand 2	E	203	208	anti-parallel
Strand 3	E	236	240	parallel
Strand 4	E	292	295	parallel
Strand 5	E	317	319	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SXF