Analysis of interatomic Contacts of Structural Units in PDB entry:
8SXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SXH entry

There are 12 chains in PDB entry 8SXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 38	ASN 436
B	SER 38	ASN 436
C	LYS 44	ASP 151
D	UNK 63	UNK 69
E	SER 38	ASN 436
F	SER 38	ASN 436
G	LYS 44	ASP 151
H	UNK 63	UNK 69
I	SER 38	ASN 436
J	SER 38	ASN 436
K	LYS 44	ASP 151
L	UNK 63	UNK 69

There are 81 helices in PDB entry 8SXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	60	Right-handed alpha
Helix 2	AA2	A	65	80	Right-handed alpha
Helix 3	AA3	A	91	101	Right-handed alpha
Helix 4	AA4	A	127	132	Right-handed alpha
Helix 5	AA5	A	152	161	Right-handed alpha
Helix 6	AA6	A	214	230	Right-handed alpha
Helix 7	AA7	A	248	260	Right-handed alpha
Helix 8	AA8	A	272	276	Right-handed 310
Helix 9	AA9	A	302	314	Right-handed alpha
Helix 10	AB1	A	336	340	Right-handed 310
Helix 11	AB2	A	417	434	Right-handed alpha
Helix 12	AB3	B	42	60	Right-handed alpha
Helix 13	AB4	B	65	82	Right-handed alpha
Helix 14	AB5	B	89	98	Right-handed alpha
Helix 15	AB6	B	127	132	Right-handed alpha
Helix 16	AB7	B	152	161	Right-handed alpha
Helix 17	AB8	B	214	230	Right-handed alpha
Helix 18	AB9	B	248	260	Right-handed alpha
Helix 19	AC1	B	302	314	Right-handed alpha
Helix 20	AC2	B	412	417	Right-handed alpha
Helix 21	AC3	B	417	435	Right-handed alpha
Helix 22	AC4	C	49	65	Right-handed alpha
Helix 23	AC5	C	67	83	Right-handed alpha
Helix 24	AC6	C	84	99	Right-handed alpha
Helix 25	AC7	C	101	115	Right-handed alpha
Helix 26	AC8	C	118	133	Right-handed alpha
Helix 27	AC9	C	135	148	Right-handed alpha
Helix 28	AD1	E	42	60	Right-handed alpha
Helix 29	AD2	E	65	80	Right-handed alpha
Helix 30	AD3	E	91	101	Right-handed alpha
Helix 31	AD4	E	127	132	Right-handed alpha
Helix 32	AD5	E	152	161	Right-handed alpha
Helix 33	AD6	E	214	230	Right-handed alpha
Helix 34	AD7	E	248	260	Right-handed alpha
Helix 35	AD8	E	272	276	Right-handed 310
Helix 36	AD9	E	302	314	Right-handed alpha
Helix 37	AE1	E	336	340	Right-handed 310
Helix 38	AE2	E	417	434	Right-handed alpha
Helix 39	AE3	F	42	60	Right-handed alpha
Helix 40	AE4	F	65	82	Right-handed alpha
Helix 41	AE5	F	89	98	Right-handed alpha
Helix 42	AE6	F	127	132	Right-handed alpha
Helix 43	AE7	F	152	161	Right-handed alpha
Helix 44	AE8	F	214	230	Right-handed alpha
Helix 45	AE9	F	248	260	Right-handed alpha
Helix 46	AF1	F	302	314	Right-handed alpha
Helix 47	AF2	F	412	417	Right-handed alpha
Helix 48	AF3	F	417	435	Right-handed alpha
Helix 49	AF4	G	49	65	Right-handed alpha
Helix 50	AF5	G	67	83	Right-handed alpha
Helix 51	AF6	G	84	99	Right-handed alpha
Helix 52	AF7	G	101	115	Right-handed alpha
Helix 53	AF8	G	118	133	Right-handed alpha
Helix 54	AF9	G	135	148	Right-handed alpha
Helix 55	AG1	I	42	60	Right-handed alpha
Helix 56	AG2	I	65	80	Right-handed alpha
Helix 57	AG3	I	91	101	Right-handed alpha
Helix 58	AG4	I	127	132	Right-handed alpha
Helix 59	AG5	I	152	161	Right-handed alpha
Helix 60	AG6	I	214	230	Right-handed alpha
Helix 61	AG7	I	248	260	Right-handed alpha
Helix 62	AG8	I	272	276	Right-handed 310
Helix 63	AG9	I	302	314	Right-handed alpha
Helix 64	AH1	I	336	340	Right-handed 310
Helix 65	AH2	I	417	434	Right-handed alpha
Helix 66	AH3	J	42	60	Right-handed alpha
Helix 67	AH4	J	65	82	Right-handed alpha
Helix 68	AH5	J	89	98	Right-handed alpha
Helix 69	AH6	J	127	132	Right-handed alpha
Helix 70	AH7	J	152	161	Right-handed alpha
Helix 71	AH8	J	214	230	Right-handed alpha
Helix 72	AH9	J	248	260	Right-handed alpha
Helix 73	AI1	J	302	314	Right-handed alpha
Helix 74	AI2	J	412	417	Right-handed alpha
Helix 75	AI3	J	417	435	Right-handed alpha
Helix 76	AI4	K	49	65	Right-handed alpha
Helix 77	AI5	K	67	83	Right-handed alpha
Helix 78	AI6	K	84	99	Right-handed alpha
Helix 79	AI7	K	101	115	Right-handed alpha
Helix 80	AI8	K	118	133	Right-handed alpha
Helix 81	AI9	K	135	148	Right-handed alpha

There are 30 sheets in PDB entry 8SXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	187	189	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	114	first strand
Strand 2	A	117	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	167	173	anti-parallel
Strand 4	A	180	185	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	236	240	parallel
Strand 4	A	292	296	parallel
Strand 5	A	318	321	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	264	270	anti-parallel
Strand 3	A	342	350	anti-parallel
Strand 4	A	330	334	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	J	372	375	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	341	348	anti-parallel
Strand 3	B	329	335	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	120	123	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	139	143	anti-parallel
Strand 3	B	167	173	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	236	241	parallel
Strand 4	B	292	296	parallel
Strand 5	B	318	319	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	E	371	374	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	106	first strand
Strand 2	E	187	189	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	114	first strand
Strand 2	E	117	123	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	139	143	anti-parallel
Strand 3	E	167	173	anti-parallel
Strand 4	E	180	185	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	196	first strand
Strand 2	E	203	208	anti-parallel
Strand 3	E	236	240	parallel
Strand 4	E	292	296	parallel
Strand 5	E	318	321	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	280	first strand
Strand 2	E	264	270	anti-parallel
Strand 3	E	342	350	anti-parallel
Strand 4	E	330	334	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	88	first strand
Strand 2	F	341	348	anti-parallel
Strand 3	F	329	335	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	111	first strand
Strand 2	F	120	123	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	147	first strand
Strand 2	F	139	143	anti-parallel
Strand 3	F	167	173	anti-parallel
Strand 4	F	180	185	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	200	first strand
Strand 2	F	203	208	anti-parallel
Strand 3	F	236	241	parallel
Strand 4	F	293	296	parallel
Strand 5	F	318	319	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	375	first strand
Strand 2	I	371	374	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	106	first strand
Strand 2	I	187	189	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	109	114	first strand
Strand 2	I	117	123	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	146	147	first strand
Strand 2	I	139	143	anti-parallel
Strand 3	I	167	173	anti-parallel
Strand 4	I	180	185	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	194	196	first strand
Strand 2	I	203	208	anti-parallel
Strand 3	I	236	240	parallel
Strand 4	I	292	296	parallel
Strand 5	I	318	321	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	277	280	first strand
Strand 2	I	264	270	anti-parallel
Strand 3	I	343	350	anti-parallel
Strand 4	I	330	333	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	88	first strand
Strand 2	J	341	348	anti-parallel
Strand 3	J	329	335	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	109	111	first strand
Strand 2	J	120	123	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	146	147	first strand
Strand 2	J	139	143	anti-parallel
Strand 3	J	167	173	anti-parallel
Strand 4	J	180	185	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	194	200	first strand
Strand 2	J	203	208	anti-parallel
Strand 3	J	236	241	parallel
Strand 4	J	292	296	parallel
Strand 5	J	318	319	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SXH