Analysis of interatomic Contacts of Structural Units in PDB entry:
8SXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SXT entry

There are 3 chains in PDB entry 8SXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A 5 C 11
C
 U -2 U 8
A
 ASN 254TYR 1061
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8SXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
255 258Right-handed 310
Helix 2
AA2
A
259 275Right-handed alpha
Helix 3
AA3
A
283 310Right-handed alpha
Helix 4
AA4
A
403 419Right-handed alpha
Helix 5
AA5
A
425 435Right-handed alpha
Helix 6
AA6
A
442 450Right-handed alpha
Helix 7
AA7
A
455 463Right-handed alpha
Helix 8
AA8
A
477 484Right-handed alpha
Helix 9
AA9
A
484 503Right-handed alpha
Helix 10
AB1
A
506 511Right-handed 310
Helix 11
AB2
A
526 528Right-handed 310
Helix 12
AB3
A
537 559Right-handed alpha
Helix 13
AB4
A
572 589Right-handed alpha
Helix 14
AB5
A
604 608Right-handed 310
Helix 15
AB6
A
609 620Right-handed alpha
Helix 16
AB7
A
624 634Right-handed alpha
Helix 17
AB8
A
663 682Right-handed alpha
Helix 18
AB9
A
710 730Right-handed alpha
Helix 19
AC1
A
746 757Right-handed alpha
Helix 20
AC2
A
776 778Right-handed 310
Helix 21
AC3
A
779 785Right-handed alpha
Helix 22
AC4
A
785 799Right-handed alpha
Helix 23
AC5
A
805 817Right-handed alpha
Helix 24
AC6
A
817 828Right-handed alpha
Helix 25
AC7
A
833 850Right-handed alpha
Helix 26
AC8
A
857 863Right-handed alpha
Helix 27
AC9
A
864 868Right-handed 310
Helix 28
AD1
A
874 885Right-handed alpha
Helix 29
AD2
A
885 893Right-handed alpha
Helix 30
AD3
A
898 902Right-handed 310
Helix 31
AD4
A
911 915Right-handed 310
Helix 32
AD5
A
933 947Right-handed alpha
Helix 33
AD6
A
961 966Right-handed alpha
Helix 34
AD7
A
970 981Right-handed alpha
Helix 35
AD8
A
984 989Right-handed alpha
Helix 36
AD9
A
990 994Right-handed 310
Helix 37
AE1
A
998 1005Right-handed alpha
Helix 38
AE2
A
1006 1008Right-handed 310
Helix 39
AE3
A
1009 1022Right-handed alpha
Helix 40
AE4
A
1022 1030Right-handed alpha
Helix 41
AE5
A
1034 1041Right-handed alpha
Helix 42
AE6
A
1048 1061Right-handed alpha
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There are 4 sheets in PDB entry 8SXT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 535first strand
Strand 2
A
513 518anti-parallel
Strand 3
A
638 642parallel
Strand 4
A
651 652anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 698first strand
Strand 2
A
704 709anti-parallel
Strand 3
A
593 599anti-parallel
Strand 4
A
739 744anti-parallel
Strand 5
A
760 761parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 690first strand
Strand 2
A
693 694anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
767 768first strand
Strand 2
A
771 772anti-parallel
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