Analysis of interatomic Contacts of Structural Units in PDB entry:
8SY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SY3 entry

There are 2 chains in PDB entry 8SY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9ASN 251
B
 PRO 9ASN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 8SY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
24 32Right-handed alpha
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
119 132Right-handed alpha
Helix 5
AA5
A
211 220Right-handed alpha
Helix 6
AA6
A
241 247Right-handed alpha
Helix 7
AA7
B
9 18Right-handed alpha
Helix 8
AA8
B
24 32Right-handed alpha
Helix 9
AA9
B
58 62Right-handed 310
Helix 10
AB1
B
119 132Right-handed alpha
Helix 11
AB2
B
211 220Right-handed alpha
Helix 12
AB3
B
241 247Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8SY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
65 73anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
A
181 192anti-parallel
Strand 5
A
194 205anti-parallel
Strand 6
A
227 232anti-parallel
Strand 7
A
52 57anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 118first strand
Strand 2
A
173 179anti-parallel
Strand 3
A
161 167anti-parallel
Strand 4
A
235 240anti-parallel
Strand 5
A
136 138anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
65 73anti-parallel
Strand 3
B
147 158anti-parallel
Strand 4
B
181 192anti-parallel
Strand 5
B
194 205anti-parallel
Strand 6
B
227 232anti-parallel
Strand 7
B
52 57anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 118first strand
Strand 2
B
173 179anti-parallel
Strand 3
B
161 167anti-parallel
Strand 4
B
235 240anti-parallel
Strand 5
B
136 138anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il