Analysis of interatomic Contacts of Structural Units in PDB entry:
8SY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SY5 entry

There are 9 chains in PDB entry 8SY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	ASP 233
G	THR 6	LEU 234
I	MET 1	GLU 1342
J	GLU 16	ARG 1373
K	ALA 10	GLN 80
N	T 1	G 12
R	A 1	G 9
T	C 7	A 18
T	C 20	G 29

There are110 helices in PDB entry 8SY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	154	158	Right-handed 310
Helix 5	AA5	A	212	226	Right-handed alpha
Helix 6	AA6	A	227	229	Right-handed 310
Helix 7	AA7	G	34	48	Right-handed alpha
Helix 8	AA8	G	77	86	Right-handed alpha
Helix 9	AA9	G	113	115	Right-handed 310
Helix 10	AB1	G	154	159	Right-handed alpha
Helix 11	AB2	G	212	228	Right-handed alpha
Helix 12	AB3	G	229	232	Right-handed 310
Helix 13	AB4	I	28	40	Right-handed alpha
Helix 14	AB5	I	48	55	Right-handed alpha
Helix 15	AB6	I	81	89	Right-handed alpha
Helix 16	AB7	I	206	212	Right-handed alpha
Helix 17	AB8	I	216	225	Right-handed alpha
Helix 18	AB9	I	345	354	Right-handed alpha
Helix 19	AC1	I	358	371	Right-handed alpha
Helix 20	AC2	I	377	390	Right-handed alpha
Helix 21	AC3	I	398	409	Right-handed alpha
Helix 22	AC4	I	421	438	Right-handed alpha
Helix 23	AC5	I	455	479	Right-handed alpha
Helix 24	AC6	I	488	493	Right-handed 310
Helix 25	AC7	I	495	509	Right-handed alpha
Helix 26	AC8	I	519	528	Right-handed alpha
Helix 27	AC9	I	551	555	Right-handed 310
Helix 28	AD1	I	609	614	Right-handed 310
Helix 29	AD2	I	646	650	Right-handed 310
Helix 30	AD3	I	664	668	Right-handed 310
Helix 31	AD4	I	670	674	Right-handed 310
Helix 32	AD5	I	675	686	Right-handed alpha
Helix 33	AD6	I	704	713	Right-handed alpha
Helix 34	AD7	I	738	741	Right-handed 310
Helix 35	AD8	I	820	825	Right-handed alpha
Helix 36	AD9	I	859	863	Right-handed 310
Helix 37	AE1	I	942	948	Right-handed alpha
Helix 38	AE2	I	948	976	Right-handed alpha
Helix 39	AE3	I	1018	1037	Right-handed alpha
Helix 40	AE4	I	1081	1085	Right-handed 310
Helix 41	AE5	I	1099	1103	Right-handed 310
Helix 42	AE6	I	1109	1134	Right-handed alpha
Helix 43	AE7	I	1137	1150	Right-handed alpha
Helix 44	AE8	I	1160	1164	Right-handed 310
Helix 45	AE9	I	1165	1176	Right-handed alpha
Helix 46	AF1	I	1191	1202	Right-handed alpha
Helix 47	AF2	I	1238	1242	Right-handed 310
Helix 48	AF3	I	1271	1282	Right-handed alpha
Helix 49	AF4	I	1283	1292	Right-handed alpha
Helix 50	AF5	I	1297	1311	Right-handed alpha
Helix 51	AF6	I	1320	1332	Right-handed alpha
Helix 52	AF7	J	26	34	Right-handed alpha
Helix 53	AF8	J	58	63	Right-handed alpha
Helix 54	AF9	J	77	81	Right-handed 310
Helix 55	AG1	J	94	100	Right-handed 310
Helix 56	AG2	J	113	118	Right-handed alpha
Helix 57	AG3	J	131	140	Right-handed alpha
Helix 58	AG4	J	182	191	Right-handed alpha
Helix 59	AG5	J	193	205	Right-handed alpha
Helix 60	AG6	J	216	231	Right-handed alpha
Helix 61	AG7	J	233	236	Right-handed 310
Helix 62	AG8	J	246	250	Right-handed 310
Helix 63	AG9	J	264	286	Right-handed alpha
Helix 64	AH1	J	288	308	Right-handed alpha
Helix 65	AH2	J	326	331	Right-handed 310
Helix 66	AH3	J	336	342	Right-handed alpha
Helix 67	AH4	J	370	377	Right-handed alpha
Helix 68	AH5	J	377	388	Right-handed alpha
Helix 69	AH6	J	393	404	Right-handed alpha
Helix 70	AH7	J	407	415	Right-handed alpha
Helix 71	AH8	J	430	432	Right-handed 310
Helix 72	AH9	J	450	452	Right-handed 310
Helix 73	AI1	J	453	458	Right-handed alpha
Helix 74	AI2	J	473	483	Right-handed alpha
Helix 75	AI3	J	504	515	Right-handed alpha
Helix 76	AI4	J	529	539	Right-handed alpha
Helix 77	AI5	J	574	580	Right-handed alpha
Helix 78	AI6	J	581	583	Right-handed 310
Helix 79	AI7	J	588	592	Right-handed 310
Helix 80	AI8	J	597	612	Right-handed alpha
Helix 81	AI9	J	614	636	Right-handed alpha
Helix 82	AJ1	J	640	644	Right-handed 310
Helix 83	AJ2	J	649	664	Right-handed alpha
Helix 84	AJ3	J	665	670	Right-handed alpha
Helix 85	AJ4	J	677	703	Right-handed alpha
Helix 86	AJ5	J	720	728	Right-handed alpha
Helix 87	AJ6	J	733	742	Right-handed alpha
Helix 88	AJ7	J	768	775	Right-handed alpha
Helix 89	AJ8	J	775	789	Right-handed alpha
Helix 90	AJ9	J	789	804	Right-handed alpha
Helix 91	AK1	J	835	840	Right-handed alpha
Helix 92	AK2	J	865	875	Right-handed alpha
Helix 93	AK3	J	896	900	Right-handed alpha
Helix 94	AK4	J	914	932	Right-handed alpha
Helix 95	AK5	J	933	938	Right-handed 310
Helix 96	AK6	J	1137	1145	Right-handed alpha
Helix 97	AK7	J	1217	1225	Right-handed alpha
Helix 98	AK8	J	1225	1244	Right-handed alpha
Helix 99	AK9	J	1250	1261	Right-handed alpha
Helix 100	AL1	J	1282	1295	Right-handed alpha
Helix 101	AL2	J	1308	1315	Right-handed alpha
Helix 102	AL3	J	1318	1326	Right-handed alpha
Helix 103	AL4	J	1327	1339	Right-handed alpha
Helix 104	AL5	J	1346	1354	Right-handed alpha
Helix 105	AL6	J	1359	1361	Right-handed 310
Helix 106	AL7	J	1362	1372	Right-handed alpha
Helix 107	AL8	K	14	22	Right-handed alpha
Helix 108	AL9	K	23	40	Right-handed alpha
Helix 109	AM1	K	53	65	Right-handed alpha
Helix 110	AM2	K	68	80	Right-handed alpha

There are 33 sheets in PDB entry 8SY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	20	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	195	207	anti-parallel
Strand 4	A	180	192	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	139	150	anti-parallel
Strand 3	A	52	61	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	20	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	139	149	anti-parallel
Strand 3	G	53	61	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	92	first strand
Strand 2	G	121	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	69	75	first strand
Strand 2	I	93	101	anti-parallel
Strand 3	I	120	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	529	531	parallel
Strand 4	I	572	574	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	160	first strand
Strand 2	I	171	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	197	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	598	607	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	652	653	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	634	638	anti-parallel
Strand 6	I	641	645	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	716	717	first strand
Strand 2	I	782	785	anti-parallel
Strand 3	I	768	769	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	748	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	728	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	789	790	first strand
Strand 2	I	793	794	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1209	1210	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1065	1067	anti-parallel
Strand 4	I	1073	1080	anti-parallel
Strand 5	I	815	819	parallel
Strand 6	I	1096	1098	anti-parallel
Strand 7	I	798	804	parallel
Strand 8	I	1225	1234	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	841	first strand
Strand 2	I	1046	1058	anti-parallel
Strand 3	I	926	935	anti-parallel
Strand 4	I	876	877	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	357	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel
Strand 7	J	447	449	anti-parallel
Strand 8	J	350	357	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1269	1270	first strand
Strand 2	J	345	346	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	112	first strand
Strand 2	J	238	244	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	253	254	first strand
Strand 2	J	260	261	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	557	parallel
Strand 3	J	563	573	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	707	709	first strand
Strand 2	J	712	714	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	809	811	first strand
Strand 2	J	894	895	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1280	1281	first strand
Strand 2	J	1263	1265	anti-parallel
Strand 3	J	1303	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SY5