Analysis of interatomic Contacts of Structural Units in PDB entry:
8SY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SY6 entry

There are 9 chains in PDB entry 8SY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	T 1	A 11
T	T 8	A 18
T	C 20	T 28
G	THR 6	LEU 234
I	MET 1	ASP 1341
J	GLU 16	ARG 1373
R	A 1	G 9
K	MET 1	GLU 74
A	VAL 5	LEU 234

There are100 helices in PDB entry 8SY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	35	51	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	113	115	Right-handed 310
Helix 4	AA4	G	212	229	Right-handed alpha
Helix 5	AA5	G	230	232	Right-handed 310
Helix 6	AA6	I	4	10	Right-handed alpha
Helix 7	AA7	I	28	40	Right-handed alpha
Helix 8	AA8	I	47	57	Right-handed alpha
Helix 9	AA9	I	81	89	Right-handed alpha
Helix 10	AB1	I	206	213	Right-handed alpha
Helix 11	AB2	I	216	225	Right-handed alpha
Helix 12	AB3	I	345	354	Right-handed alpha
Helix 13	AB4	I	358	371	Right-handed alpha
Helix 14	AB5	I	380	390	Right-handed alpha
Helix 15	AB6	I	398	409	Right-handed alpha
Helix 16	AB7	I	421	438	Right-handed alpha
Helix 17	AB8	I	455	481	Right-handed alpha
Helix 18	AB9	I	488	493	Right-handed alpha
Helix 19	AC1	I	495	509	Right-handed alpha
Helix 20	AC2	I	519	528	Right-handed alpha
Helix 21	AC3	I	608	614	Right-handed alpha
Helix 22	AC4	I	662	667	Right-handed alpha
Helix 23	AC5	I	670	674	Right-handed 310
Helix 24	AC6	I	675	687	Right-handed alpha
Helix 25	AC7	I	704	713	Right-handed alpha
Helix 26	AC8	I	820	825	Right-handed alpha
Helix 27	AC9	I	858	865	Right-handed alpha
Helix 28	AD1	I	943	971	Right-handed alpha
Helix 29	AD2	I	1022	1038	Right-handed alpha
Helix 30	AD3	I	1081	1085	Right-handed 310
Helix 31	AD4	I	1101	1106	Right-handed alpha
Helix 32	AD5	I	1109	1134	Right-handed alpha
Helix 33	AD6	I	1137	1150	Right-handed alpha
Helix 34	AD7	I	1165	1176	Right-handed alpha
Helix 35	AD8	I	1191	1202	Right-handed alpha
Helix 36	AD9	I	1238	1243	Right-handed alpha
Helix 37	AE1	I	1271	1282	Right-handed alpha
Helix 38	AE2	I	1283	1292	Right-handed alpha
Helix 39	AE3	I	1297	1310	Right-handed alpha
Helix 40	AE4	I	1320	1334	Right-handed alpha
Helix 41	AE5	J	26	34	Right-handed alpha
Helix 42	AE6	J	77	81	Right-handed 310
Helix 43	AE7	J	94	100	Right-handed 310
Helix 44	AE8	J	113	118	Right-handed alpha
Helix 45	AE9	J	122	128	Right-handed alpha
Helix 46	AF1	J	131	140	Right-handed alpha
Helix 47	AF2	J	182	192	Right-handed alpha
Helix 48	AF3	J	193	205	Right-handed alpha
Helix 49	AF4	J	216	231	Right-handed alpha
Helix 50	AF5	J	233	236	Right-handed 310
Helix 51	AF6	J	246	250	Right-handed 310
Helix 52	AF7	J	263	285	Right-handed alpha
Helix 53	AF8	J	288	293	Right-handed alpha
Helix 54	AF9	J	293	307	Right-handed alpha
Helix 55	AG1	J	326	331	Right-handed 310
Helix 56	AG2	J	336	341	Right-handed alpha
Helix 57	AG3	J	370	377	Right-handed alpha
Helix 58	AG4	J	377	388	Right-handed alpha
Helix 59	AG5	J	393	404	Right-handed alpha
Helix 60	AG6	J	405	416	Right-handed alpha
Helix 61	AG7	J	430	432	Right-handed 310
Helix 62	AG8	J	450	452	Right-handed 310
Helix 63	AG9	J	453	458	Right-handed alpha
Helix 64	AH1	J	473	483	Right-handed alpha
Helix 65	AH2	J	504	515	Right-handed alpha
Helix 66	AH3	J	529	540	Right-handed alpha
Helix 67	AH4	J	574	580	Right-handed alpha
Helix 68	AH5	J	588	592	Right-handed 310
Helix 69	AH6	J	597	612	Right-handed alpha
Helix 70	AH7	J	614	636	Right-handed alpha
Helix 71	AH8	J	648	670	Right-handed alpha
Helix 72	AH9	J	674	704	Right-handed alpha
Helix 73	AI1	J	720	729	Right-handed alpha
Helix 74	AI2	J	733	742	Right-handed alpha
Helix 75	AI3	J	768	804	Right-handed alpha
Helix 76	AI4	J	834	839	Right-handed alpha
Helix 77	AI5	J	865	876	Right-handed alpha
Helix 78	AI6	J	896	900	Right-handed alpha
Helix 79	AI7	J	914	933	Right-handed alpha
Helix 80	AI8	J	1069	1073	Right-handed 310
Helix 81	AI9	J	1133	1147	Right-handed alpha
Helix 82	AJ1	J	1216	1243	Right-handed alpha
Helix 83	AJ2	J	1249	1261	Right-handed alpha
Helix 84	AJ3	J	1282	1295	Right-handed alpha
Helix 85	AJ4	J	1308	1315	Right-handed alpha
Helix 86	AJ5	J	1318	1326	Right-handed alpha
Helix 87	AJ6	J	1327	1339	Right-handed alpha
Helix 88	AJ7	J	1347	1354	Right-handed alpha
Helix 89	AJ8	J	1359	1361	Right-handed 310
Helix 90	AJ9	J	1362	1373	Right-handed alpha
Helix 91	AK1	K	6	14	Right-handed alpha
Helix 92	AK2	K	19	25	Right-handed alpha
Helix 93	AK3	K	25	32	Right-handed alpha
Helix 94	AK4	K	48	57	Right-handed alpha
Helix 95	AK5	K	60	73	Right-handed alpha
Helix 96	AK6	A	34	50	Right-handed alpha
Helix 97	AK7	A	77	88	Right-handed alpha
Helix 98	AK8	A	113	115	Right-handed 310
Helix 99	AK9	A	154	159	Right-handed alpha
Helix 100	AL1	A	212	229	Right-handed alpha

There are 36 sheets in PDB entry 8SY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	18	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	105	first strand
Strand 2	G	139	149	anti-parallel
Strand 3	G	53	61	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	175	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	75	first strand
Strand 2	I	93	103	anti-parallel
Strand 3	I	120	128	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	529	531	parallel
Strand 4	I	572	574	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	159	first strand
Strand 2	I	172	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	198	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	598	607	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	652	653	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	633	638	anti-parallel
Strand 6	I	641	646	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	716	717	first strand
Strand 2	I	782	785	anti-parallel
Strand 3	I	768	769	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	748	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1065	1067	first strand
Strand 2	I	1073	1079	anti-parallel
Strand 3	I	816	818	parallel
Strand 4	I	1096	1098	anti-parallel
Strand 5	I	798	804	parallel
Strand 6	I	1225	1232	anti-parallel
Strand 7	I	1209	1210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	841	first strand
Strand 2	I	1046	1058	anti-parallel
Strand 3	I	926	935	anti-parallel
Strand 4	I	876	877	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel
Strand 7	J	447	448	anti-parallel
Strand 8	J	350	356	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1269	1270	first strand
Strand 2	J	345	346	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	112	first strand
Strand 2	J	238	244	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	556	parallel
Strand 3	J	564	573	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	709	first strand
Strand 2	J	712	715	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	809	811	first strand
Strand 2	J	894	895	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel
Strand 3	J	844	846	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	951	first strand
Strand 2	J	1016	1019	anti-parallel
Strand 3	J	1002	1003	anti-parallel
Strand 4	J	973	975	anti-parallel
Strand 5	J	965	967	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	960	961	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	991	996	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1024	1026	first strand
Strand 2	J	1122	1125	anti-parallel
Strand 3	J	1106	1107	anti-parallel
Strand 4	J	1059	1061	anti-parallel
Strand 5	J	1046	1048	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1098	1099	first strand
Strand 2	J	1077	1081	anti-parallel
Strand 3	J	1033	1038	anti-parallel
Strand 4	J	1114	1115	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1155	1156	first strand
Strand 2	J	1209	1211	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1304	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	139	150	anti-parallel
Strand 3	A	52	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SY6