Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SYF entry

There are 8 chains in PDB entry 8SYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 851
B	SER 2	LEU 851
C	ASP 1	PHE 375
D	ASP 1	PHE 375
E	PHE 3	GLY 150
F	PHE 25	LYS 167
G	PHE 25	LYS 167
H	PHE 3	GLY 150

There are131 helices in PDB entry 8SYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	96	110	Right-handed alpha
Helix 5	AA5	A	134	140	Right-handed alpha
Helix 6	AA6	A	152	166	Right-handed alpha
Helix 7	AA7	A	182	198	Right-handed alpha
Helix 8	AA8	A	219	235	Right-handed alpha
Helix 9	AA9	A	273	279	Right-handed alpha
Helix 10	AB1	A	287	297	Right-handed alpha
Helix 11	AB2	A	298	305	Right-handed alpha
Helix 12	AB3	A	327	343	Right-handed alpha
Helix 13	AB4	A	347	363	Right-handed alpha
Helix 14	AB5	A	381	392	Right-handed alpha
Helix 15	AB6	A	394	404	Right-handed alpha
Helix 16	AB7	A	419	451	Right-handed alpha
Helix 17	AB8	A	476	508	Right-handed alpha
Helix 18	AB9	A	516	520	Right-handed 310
Helix 19	AC1	A	521	530	Right-handed alpha
Helix 20	AC2	A	536	546	Right-handed alpha
Helix 21	AC3	A	552	562	Right-handed alpha
Helix 22	AC4	A	596	601	Right-handed alpha
Helix 23	AC5	A	606	615	Right-handed alpha
Helix 24	AC6	A	618	625	Right-handed alpha
Helix 25	AC7	A	659	676	Right-handed alpha
Helix 26	AC8	A	697	707	Right-handed alpha
Helix 27	AC9	A	709	720	Right-handed alpha
Helix 28	AD1	A	727	738	Right-handed alpha
Helix 29	AD2	A	748	759	Right-handed alpha
Helix 30	AD3	A	779	812	Right-handed alpha
Helix 31	AD4	A	814	836	Right-handed alpha
Helix 32	AD5	A	847	851	Right-handed 310
Helix 33	AD6	B	7	12	Right-handed alpha
Helix 34	AD7	B	88	92	Right-handed 310
Helix 35	AD8	B	96	110	Right-handed alpha
Helix 36	AD9	B	130	133	Right-handed 310
Helix 37	AE1	B	134	140	Right-handed alpha
Helix 38	AE2	B	154	165	Right-handed alpha
Helix 39	AE3	B	182	198	Right-handed alpha
Helix 40	AE4	B	220	235	Right-handed alpha
Helix 41	AE5	B	273	279	Right-handed alpha
Helix 42	AE6	B	288	295	Right-handed alpha
Helix 43	AE7	B	298	305	Right-handed alpha
Helix 44	AE8	B	327	343	Right-handed alpha
Helix 45	AE9	B	345	365	Right-handed alpha
Helix 46	AF1	B	381	391	Right-handed alpha
Helix 47	AF2	B	394	404	Right-handed alpha
Helix 48	AF3	B	419	451	Right-handed alpha
Helix 49	AF4	B	476	508	Right-handed alpha
Helix 50	AF5	B	517	524	Right-handed 310
Helix 51	AF6	B	525	530	Right-handed alpha
Helix 52	AF7	B	536	546	Right-handed alpha
Helix 53	AF8	B	551	563	Right-handed alpha
Helix 54	AF9	B	597	601	Right-handed 310
Helix 55	AG1	B	606	615	Right-handed alpha
Helix 56	AG2	B	618	625	Right-handed alpha
Helix 57	AG3	B	658	676	Right-handed alpha
Helix 58	AG4	B	697	708	Right-handed alpha
Helix 59	AG5	B	709	720	Right-handed alpha
Helix 60	AG6	B	727	736	Right-handed alpha
Helix 61	AG7	B	748	761	Right-handed alpha
Helix 62	AG8	B	779	837	Right-handed alpha
Helix 63	AG9	B	843	851	Right-handed 310
Helix 64	AH1	C	54	60	Right-handed 310
Helix 65	AH2	C	78	90	Right-handed alpha
Helix 66	AH3	C	112	126	Right-handed alpha
Helix 67	AH4	C	137	145	Right-handed alpha
Helix 68	AH5	C	181	197	Right-handed alpha
Helix 69	AH6	C	202	216	Right-handed alpha
Helix 70	AH7	C	222	230	Right-handed alpha
Helix 71	AH8	C	251	254	Right-handed 310
Helix 72	AH9	C	255	263	Right-handed alpha
Helix 73	AI1	C	264	267	Right-handed 310
Helix 74	AI2	C	273	285	Right-handed alpha
Helix 75	AI3	C	286	296	Right-handed alpha
Helix 76	AI4	C	302	306	Right-handed 310
Helix 77	AI5	C	308	320	Right-handed alpha
Helix 78	AI6	C	337	349	Right-handed alpha
Helix 79	AI7	C	350	355	Right-handed 310
Helix 80	AI8	C	359	366	Right-handed alpha
Helix 81	AI9	C	368	374	Right-handed alpha
Helix 82	AJ1	D	55	61	Right-handed alpha
Helix 83	AJ2	D	78	90	Right-handed alpha
Helix 84	AJ3	D	112	126	Right-handed alpha
Helix 85	AJ4	D	137	145	Right-handed alpha
Helix 86	AJ5	D	181	197	Right-handed alpha
Helix 87	AJ6	D	202	216	Right-handed alpha
Helix 88	AJ7	D	222	230	Right-handed alpha
Helix 89	AJ8	D	251	263	Right-handed alpha
Helix 90	AJ9	D	264	267	Right-handed 310
Helix 91	AK1	D	273	284	Right-handed alpha
Helix 92	AK2	D	286	296	Right-handed alpha
Helix 93	AK3	D	308	320	Right-handed alpha
Helix 94	AK4	D	337	349	Right-handed alpha
Helix 95	AK5	D	350	354	Right-handed 310
Helix 96	AK6	D	359	366	Right-handed alpha
Helix 97	AK7	D	367	374	Right-handed alpha
Helix 98	AK8	E	7	18	Right-handed alpha
Helix 99	AK9	E	27	38	Right-handed alpha
Helix 100	AL1	E	43	50	Right-handed alpha
Helix 101	AL2	E	55	61	Right-handed alpha
Helix 102	AL3	E	66	77	Right-handed alpha
Helix 103	AL4	E	84	96	Right-handed alpha
Helix 104	AL5	E	104	114	Right-handed alpha
Helix 105	AL6	E	120	129	Right-handed alpha
Helix 106	AL7	E	139	150	Right-handed alpha
Helix 107	AL8	F	26	41	Right-handed alpha
Helix 108	AL9	F	49	61	Right-handed alpha
Helix 109	AM1	F	65	74	Right-handed alpha
Helix 110	AM2	F	81	94	Right-handed alpha
Helix 111	AM3	F	98	110	Right-handed alpha
Helix 112	AM4	F	119	129	Right-handed alpha
Helix 113	AM5	F	134	144	Right-handed alpha
Helix 114	AM6	F	157	162	Right-handed alpha
Helix 115	AM7	G	26	41	Right-handed alpha
Helix 116	AM8	G	49	61	Right-handed alpha
Helix 117	AM9	G	65	74	Right-handed alpha
Helix 118	AN1	G	81	92	Right-handed alpha
Helix 119	AN2	G	98	108	Right-handed alpha
Helix 120	AN3	G	119	128	Right-handed alpha
Helix 121	AN4	G	135	143	Right-handed alpha
Helix 122	AN5	G	154	163	Right-handed alpha
Helix 123	AN6	H	4	18	Right-handed alpha
Helix 124	AN7	H	27	38	Right-handed alpha
Helix 125	AN8	H	43	50	Right-handed alpha
Helix 126	AN9	H	68	78	Right-handed alpha
Helix 127	AO1	H	84	95	Right-handed alpha
Helix 128	AO2	H	105	114	Right-handed alpha
Helix 129	AO3	H	120	129	Right-handed alpha
Helix 130	AO4	H	133	135	Right-handed 310
Helix 131	AO5	H	139	150	Right-handed alpha

There are 27 sheets in PDB entry 8SYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	66	70	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	121	123	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	270	first strand
Strand 2	A	249	257	anti-parallel
Strand 3	A	459	465	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	413	414	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	580	583	anti-parallel
Strand 3	A	590	593	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	726	first strand
Strand 2	A	773	776	anti-parallel
Strand 3	A	767	769	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	67	70	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	117	first strand
Strand 2	B	120	124	anti-parallel
Strand 3	B	678	685	parallel
Strand 4	B	171	176	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	270	first strand
Strand 2	B	249	256	anti-parallel
Strand 3	B	459	465	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	413	414	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	570	first strand
Strand 2	B	580	583	anti-parallel
Strand 3	B	590	593	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	726	first strand
Strand 2	B	773	776	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	17	20	anti-parallel
Strand 3	C	29	31	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	131	136	parallel
Strand 3	C	357	358	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	163	anti-parallel
Strand 3	C	151	154	anti-parallel
Strand 4	C	297	298	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	246	250	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	20	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	164	anti-parallel
Strand 3	D	151	155	anti-parallel
Strand 4	D	297	300	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	246	250	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	26	first strand
Strand 2	E	64	65	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	118	first strand
Strand 2	F	152	153	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	64	65	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	104	first strand
Strand 2	H	137	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYF