Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SYG entry

There are 14 chains in PDB entry 8SYG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 345	HIS 478
A	VAL 345	HIS 478
C	VAL 345	HIS 478
D	VAL 345	HIS 478
E	VAL 345	HIS 478
F	VAL 345	HIS 478
G	VAL 345	HIS 478
H	VAL 345	HIS 478
I	VAL 345	HIS 478
J	VAL 345	HIS 478
K	VAL 345	HIS 478
L	VAL 345	HIS 478
M	VAL 345	HIS 478
N	VAL 345	HIS 478

There are 56 helices in PDB entry 8SYG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	345	364	Right-handed alpha
Helix 2	AA2	B	365	372	Right-handed alpha
Helix 3	AA3	B	381	385	Right-handed 310
Helix 4	AA4	B	392	402	Right-handed alpha
Helix 5	AA5	A	346	364	Right-handed alpha
Helix 6	AA6	A	365	372	Right-handed alpha
Helix 7	AA7	A	381	385	Right-handed 310
Helix 8	AA8	A	392	402	Right-handed alpha
Helix 9	AA9	C	346	364	Right-handed alpha
Helix 10	AB1	C	365	372	Right-handed alpha
Helix 11	AB2	C	381	385	Right-handed 310
Helix 12	AB3	C	392	402	Right-handed alpha
Helix 13	AB4	D	346	364	Right-handed alpha
Helix 14	AB5	D	365	372	Right-handed alpha
Helix 15	AB6	D	381	385	Right-handed 310
Helix 16	AB7	D	392	402	Right-handed alpha
Helix 17	AB8	E	346	364	Right-handed alpha
Helix 18	AB9	E	365	372	Right-handed alpha
Helix 19	AC1	E	381	385	Right-handed 310
Helix 20	AC2	E	392	402	Right-handed alpha
Helix 21	AC3	F	346	364	Right-handed alpha
Helix 22	AC4	F	365	372	Right-handed alpha
Helix 23	AC5	F	381	385	Right-handed 310
Helix 24	AC6	F	392	402	Right-handed alpha
Helix 25	AC7	G	346	364	Right-handed alpha
Helix 26	AC8	G	365	372	Right-handed alpha
Helix 27	AC9	G	381	385	Right-handed 310
Helix 28	AD1	G	392	402	Right-handed alpha
Helix 29	AD2	H	346	364	Right-handed alpha
Helix 30	AD3	H	365	372	Right-handed alpha
Helix 31	AD4	H	381	385	Right-handed 310
Helix 32	AD5	H	392	402	Right-handed alpha
Helix 33	AD6	I	346	364	Right-handed alpha
Helix 34	AD7	I	365	372	Right-handed alpha
Helix 35	AD8	I	381	385	Right-handed 310
Helix 36	AD9	I	392	402	Right-handed alpha
Helix 37	AE1	J	346	364	Right-handed alpha
Helix 38	AE2	J	365	372	Right-handed alpha
Helix 39	AE3	J	381	385	Right-handed 310
Helix 40	AE4	J	392	402	Right-handed alpha
Helix 41	AE5	K	346	364	Right-handed alpha
Helix 42	AE6	K	365	372	Right-handed alpha
Helix 43	AE7	K	381	385	Right-handed 310
Helix 44	AE8	K	392	402	Right-handed alpha
Helix 45	AE9	L	346	364	Right-handed alpha
Helix 46	AF1	L	365	372	Right-handed alpha
Helix 47	AF2	L	381	385	Right-handed 310
Helix 48	AF3	L	392	402	Right-handed alpha
Helix 49	AF4	M	346	364	Right-handed alpha
Helix 50	AF5	M	365	372	Right-handed alpha
Helix 51	AF6	M	381	385	Right-handed 310
Helix 52	AF7	M	392	402	Right-handed alpha
Helix 53	AF8	N	346	364	Right-handed alpha
Helix 54	AF9	N	365	372	Right-handed alpha
Helix 55	AG1	N	381	385	Right-handed 310
Helix 56	AG2	N	392	402	Right-handed alpha

There are 14 sheets in PDB entry 8SYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	373	380	anti-parallel
Strand 3	B	461	471	parallel
Strand 4	B	444	458	anti-parallel
Strand 5	B	426	438	anti-parallel
Strand 6	B	410	421	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	373	380	anti-parallel
Strand 3	A	461	471	parallel
Strand 4	A	444	458	anti-parallel
Strand 5	A	426	438	anti-parallel
Strand 6	A	410	421	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	373	380	anti-parallel
Strand 3	C	461	471	parallel
Strand 4	C	444	458	anti-parallel
Strand 5	C	426	438	anti-parallel
Strand 6	C	410	421	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	D	373	380	anti-parallel
Strand 3	D	461	471	parallel
Strand 4	D	444	458	anti-parallel
Strand 5	D	426	438	anti-parallel
Strand 6	D	410	421	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	389	390	first strand
Strand 2	E	373	380	anti-parallel
Strand 3	E	461	471	parallel
Strand 4	E	444	458	anti-parallel
Strand 5	E	426	438	anti-parallel
Strand 6	E	410	421	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	390	first strand
Strand 2	F	373	380	anti-parallel
Strand 3	F	461	471	parallel
Strand 4	F	444	458	anti-parallel
Strand 5	F	426	438	anti-parallel
Strand 6	F	410	421	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	389	390	first strand
Strand 2	G	373	380	anti-parallel
Strand 3	G	461	471	parallel
Strand 4	G	444	458	anti-parallel
Strand 5	G	426	438	anti-parallel
Strand 6	G	410	421	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	389	390	first strand
Strand 2	H	373	380	anti-parallel
Strand 3	H	461	471	parallel
Strand 4	H	444	458	anti-parallel
Strand 5	H	426	438	anti-parallel
Strand 6	H	410	421	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	389	390	first strand
Strand 2	I	373	380	anti-parallel
Strand 3	I	461	471	parallel
Strand 4	I	444	458	anti-parallel
Strand 5	I	426	438	anti-parallel
Strand 6	I	410	421	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	389	390	first strand
Strand 2	J	373	380	anti-parallel
Strand 3	J	461	471	parallel
Strand 4	J	444	458	anti-parallel
Strand 5	J	426	438	anti-parallel
Strand 6	J	410	421	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	389	390	first strand
Strand 2	K	373	380	anti-parallel
Strand 3	K	461	471	parallel
Strand 4	K	444	458	anti-parallel
Strand 5	K	426	438	anti-parallel
Strand 6	K	410	421	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	389	390	first strand
Strand 2	L	373	380	anti-parallel
Strand 3	L	461	471	parallel
Strand 4	L	444	458	anti-parallel
Strand 5	L	426	438	anti-parallel
Strand 6	L	410	421	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	389	390	first strand
Strand 2	M	373	380	anti-parallel
Strand 3	M	461	471	parallel
Strand 4	M	444	458	anti-parallel
Strand 5	M	426	438	anti-parallel
Strand 6	M	410	421	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	389	390	first strand
Strand 2	N	373	380	anti-parallel
Strand 3	N	461	471	parallel
Strand 4	N	444	458	anti-parallel
Strand 5	N	426	438	anti-parallel
Strand 6	N	410	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SYG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYG