Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SYH entry

There are 2 chains in PDB entry 8SYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 2VAL 361
B
 TRP 2ILE 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8SYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 27Right-handed alpha
Helix 2
AA2
A
47 54Right-handed alpha
Helix 3
AA3
A
69 89Right-handed alpha
Helix 4
AA4
A
99 111Right-handed alpha
Helix 5
AA5
A
130 143Right-handed alpha
Helix 6
AA6
A
150 160Right-handed alpha
Helix 7
AA7
A
163 165Right-handed 310
Helix 8
AA8
A
172 189Right-handed alpha
Helix 9
AA9
A
190 195Right-handed alpha
Helix 10
AB1
A
209 214Right-handed alpha
Helix 11
AB2
A
215 233Right-handed alpha
Helix 12
AB3
A
240 250Right-handed alpha
Helix 13
AB4
A
252 258Right-handed alpha
Helix 14
AB5
A
266 277Right-handed alpha
Helix 15
AB6
A
284 294Right-handed alpha
Helix 16
AB7
A
307 313Right-handed alpha
Helix 17
AB8
A
323 335Right-handed alpha
Helix 18
AB9
A
349 361Right-handed alpha
Helix 19
AC1
B
11 28Right-handed alpha
Helix 20
AC2
B
47 55Right-handed alpha
Helix 21
AC3
B
69 89Right-handed alpha
Helix 22
AC4
B
99 111Right-handed alpha
Helix 23
AC5
B
130 143Right-handed alpha
Helix 24
AC6
B
150 160Right-handed alpha
Helix 25
AC7
B
163 165Right-handed 310
Helix 26
AC8
B
172 189Right-handed alpha
Helix 27
AC9
B
190 196Right-handed alpha
Helix 28
AD1
B
209 214Right-handed alpha
Helix 29
AD2
B
215 231Right-handed alpha
Helix 30
AD3
B
240 250Right-handed alpha
Helix 31
AD4
B
252 259Right-handed 310
Helix 32
AD5
B
266 276Right-handed alpha
Helix 33
AD6
B
284 294Right-handed alpha
Helix 34
AD7
B
308 313Right-handed alpha
Helix 35
AD8
B
323 335Right-handed alpha
Helix 36
AD9
B
349 361Right-handed alpha
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There are 4 sheets in PDB entry 8SYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
31 37parallel
Strand 3
A
3 9parallel
Strand 4
A
92 96parallel
Strand 5
A
116 119parallel
Strand 6
A
145 148parallel
Strand 7
A
167 169parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
235 238parallel
Strand 3
A
203 206parallel
Strand 4
A
279 282parallel
Strand 5
A
298 300parallel
Strand 6
A
316 318parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
31 37parallel
Strand 3
B
3 9parallel
Strand 4
B
92 96parallel
Strand 5
B
116 119parallel
Strand 6
B
145 148parallel
Strand 7
B
167 169parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
235 238parallel
Strand 3
B
203 206parallel
Strand 4
B
279 282parallel
Strand 5
B
298 300parallel
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