Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SYI entry

There are 10 chains in PDB entry 8SYI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	SER 227
B	THR 2	SER 227
C	PHE 12	SER 1089
D	GLU 5	HIS 624
Z	GLU 3	LYS 1237
E	LEU 7	ASN 69
G	GLU 19	LYS 138
N	C 4	C 40
R	U 4	A 20
T	G 1	G 37

There are 99 helices in PDB entry 8SYI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	44	Right-handed alpha
Helix 2	AA2	A	73	82	Right-handed alpha
Helix 3	AA3	A	109	111	Right-handed 310
Helix 4	AA4	A	204	221	Right-handed alpha
Helix 5	AA5	B	30	46	Right-handed alpha
Helix 6	AA6	B	73	82	Right-handed alpha
Helix 7	AA7	B	107	111	Right-handed 310
Helix 8	AA8	B	206	221	Right-handed alpha
Helix 9	AA9	B	222	224	Right-handed 310
Helix 10	AB1	C	19	32	Right-handed alpha
Helix 11	AB2	C	32	39	Right-handed alpha
Helix 12	AB3	C	67	75	Right-handed alpha
Helix 13	AB4	C	182	189	Right-handed alpha
Helix 14	AB5	C	192	200	Right-handed alpha
Helix 15	AB6	C	202	214	Right-handed alpha
Helix 16	AB7	C	217	230	Right-handed alpha
Helix 17	AB8	C	236	248	Right-handed alpha
Helix 18	AB9	C	256	269	Right-handed alpha
Helix 19	AC1	C	280	297	Right-handed alpha
Helix 20	AC2	C	316	341	Right-handed alpha
Helix 21	AC3	C	349	353	Right-handed 310
Helix 22	AC4	C	356	370	Right-handed alpha
Helix 23	AC5	C	380	388	Right-handed alpha
Helix 24	AC6	C	412	416	Right-handed 310
Helix 25	AC7	C	472	476	Right-handed 310
Helix 26	AC8	C	527	531	Right-handed 310
Helix 27	AC9	C	533	537	Right-handed 310
Helix 28	AD1	C	538	549	Right-handed alpha
Helix 29	AD2	C	567	572	Right-handed alpha
Helix 30	AD3	C	676	681	Right-handed alpha
Helix 31	AD4	C	714	718	Right-handed 310
Helix 32	AD5	C	855	859	Right-handed 310
Helix 33	AD6	C	865	881	Right-handed alpha
Helix 34	AD7	C	896	914	Right-handed alpha
Helix 35	AD8	C	915	919	Right-handed 310
Helix 36	AD9	C	955	959	Right-handed 310
Helix 37	AE1	C	978	982	Right-handed 310
Helix 38	AE2	C	988	998	Right-handed alpha
Helix 39	AE3	C	1001	1009	Right-handed alpha
Helix 40	AE4	C	1016	1028	Right-handed alpha
Helix 41	AE5	C	1037	1049	Right-handed alpha
Helix 42	AE6	D	17	25	Right-handed alpha
Helix 43	AE7	D	58	63	Right-handed alpha
Helix 44	AE8	D	94	100	Right-handed 310
Helix 45	AE9	D	122	129	Right-handed alpha
Helix 46	AF1	D	131	139	Right-handed alpha
Helix 47	AF2	D	140	142	Right-handed 310
Helix 48	AF3	D	162	174	Right-handed alpha
Helix 49	AF4	D	191	198	Right-handed alpha
Helix 50	AF5	D	200	214	Right-handed alpha
Helix 51	AF6	D	220	237	Right-handed alpha
Helix 52	AF7	D	239	242	Right-handed 310
Helix 53	AF8	D	252	256	Right-handed 310
Helix 54	AF9	D	270	292	Right-handed alpha
Helix 55	AG1	D	294	314	Right-handed alpha
Helix 56	AG2	D	334	339	Right-handed alpha
Helix 57	AG3	D	342	348	Right-handed alpha
Helix 58	AG4	D	376	383	Right-handed alpha
Helix 59	AG5	D	383	394	Right-handed alpha
Helix 60	AG6	D	399	410	Right-handed alpha
Helix 61	AG7	D	412	422	Right-handed alpha
Helix 62	AG8	D	436	438	Right-handed 310
Helix 63	AG9	D	456	458	Right-handed 310
Helix 64	AH1	D	459	464	Right-handed alpha
Helix 65	AH2	D	479	490	Right-handed alpha
Helix 66	AH3	D	491	495	Right-handed 310
Helix 67	AH4	D	510	521	Right-handed alpha
Helix 68	AH5	D	536	546	Right-handed alpha
Helix 69	AH6	D	579	581	Right-handed 310
Helix 70	AH7	D	608	624	Right-handed alpha
Helix 71	AH8	Z	16	32	Right-handed alpha
Helix 72	AH9	Z	34	51	Right-handed alpha
Helix 73	AI1	Z	68	89	Right-handed alpha
Helix 74	AI2	Z	93	121	Right-handed alpha
Helix 75	AI3	Z	127	135	Right-handed alpha
Helix 76	AI4	Z	144	149	Right-handed alpha
Helix 77	AI5	Z	175	211	Right-handed alpha
Helix 78	AI6	Z	241	246	Right-handed alpha
Helix 79	AI7	Z	272	282	Right-handed alpha
Helix 80	AI8	Z	302	307	Right-handed alpha
Helix 81	AI9	Z	321	332	Right-handed alpha
Helix 82	AJ1	Z	333	337	Right-handed 310
Helix 83	AJ2	Z	764	768	Right-handed 310
Helix 84	AJ3	Z	807	811	Right-handed 310
Helix 85	AJ4	Z	994	1003	Right-handed alpha
Helix 86	AJ5	Z	1072	1088	Right-handed alpha
Helix 87	AJ6	Z	1090	1117	Right-handed alpha
Helix 88	AJ7	Z	1122	1131	Right-handed alpha
Helix 89	AJ8	Z	1155	1167	Right-handed alpha
Helix 90	AJ9	Z	1191	1197	Right-handed alpha
Helix 91	AK1	Z	1200	1212	Right-handed alpha
Helix 92	AK2	Z	1222	1227	Right-handed alpha
Helix 93	AK3	Z	1232	1236	Right-handed 310
Helix 94	AK4	E	8	21	Right-handed alpha
Helix 95	AK5	E	25	44	Right-handed alpha
Helix 96	AK6	E	55	68	Right-handed alpha
Helix 97	AK7	G	33	48	Right-handed alpha
Helix 98	AK8	G	91	100	Right-handed alpha
Helix 99	AK9	G	129	137	Right-handed alpha

There are 54 sheets in PDB entry 8SYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	18	27	anti-parallel
Strand 3	A	191	199	anti-parallel
Strand 4	A	172	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	101	first strand
Strand 2	A	134	144	anti-parallel
Strand 3	A	49	57	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	118	119	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	125	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	167	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	12	first strand
Strand 2	B	18	27	anti-parallel
Strand 3	B	191	199	anti-parallel
Strand 4	B	172	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	98	first strand
Strand 2	B	137	145	anti-parallel
Strand 3	B	48	57	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	117	119	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	127	129	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	50	54	anti-parallel
Strand 3	C	79	90	anti-parallel
Strand 4	C	95	107	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	120	124	anti-parallel
Strand 3	C	373	375	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	126	130	anti-parallel
Strand 3	C	390	392	parallel
Strand 4	C	433	435	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	140	first strand
Strand 2	C	146	153	anti-parallel
Strand 3	C	160	164	anti-parallel
Strand 4	C	170	174	anti-parallel
Strand 5	C	180	181	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	442	first strand
Strand 2	C	448	456	anti-parallel
Strand 3	C	467	469	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	461	first strand
Strand 2	C	448	456	anti-parallel
Strand 3	C	515	517	anti-parallel
Strand 4	C	479	480	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	500	first strand
Strand 2	C	505	508	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	564	first strand
Strand 2	C	884	885	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	580	first strand
Strand 2	C	638	642	anti-parallel
Strand 3	C	623	625	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	608	first strand
Strand 2	C	594	598	anti-parallel
Strand 3	C	585	590	anti-parallel
Strand 4	C	632	633	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	926	927	first strand
Strand 2	C	942	951	anti-parallel
Strand 3	C	821	824	anti-parallel
Strand 4	C	829	836	anti-parallel
Strand 5	C	671	675	parallel
Strand 6	C	852	854	anti-parallel
Strand 7	C	654	660	parallel
Strand 8	C	942	951	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	697	first strand
Strand 2	C	802	814	anti-parallel
Strand 3	C	782	786	anti-parallel
Strand 4	C	732	733	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	697	first strand
Strand 2	C	802	814	anti-parallel
Strand 3	C	789	791	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	742	745	anti-parallel
Strand 3	C	769	771	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	738	740	first strand
Strand 2	C	774	775	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	961	963	first strand
Strand 2	D	356	363	anti-parallel
Strand 3	D	471	475	anti-parallel
Strand 4	D	427	430	anti-parallel
Strand 5	D	440	448	anti-parallel
Strand 6	D	371	375	parallel
Strand 7	D	453	455	anti-parallel
Strand 8	D	356	363	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	985	987	first strand
Strand 2	D	351	353	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1068	1070	first strand
Strand 2	C	1055	1058	anti-parallel
Strand 3	D	10	12	anti-parallel
Strand 4	Z	1214	1215	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	112	first strand
Strand 2	D	244	249	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	144	148	anti-parallel
Strand 3	D	185	186	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	266	267	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	535	first strand
Strand 2	D	555	558	parallel
Strand 3	D	604	607	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	563	565	first strand
Strand 2	Z	10	12	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	576	577	first strand
Strand 2	D	583	584	anti-parallel
Strand 3	D	593	594	anti-parallel
Strand 4	D	600	602	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	227	229	first strand
Strand 2	Z	287	289	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	232	234	first strand
Strand 2	Z	237	240	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	255	256	first strand
Strand 2	Z	263	265	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	353	358	first strand
Strand 2	Z	423	429	anti-parallel
Strand 3	Z	409	411	anti-parallel
Strand 4	Z	382	386	anti-parallel
Strand 5	Z	373	376	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	395	396	first strand
Strand 2	Z	399	400	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	441	446	first strand
Strand 2	Z	977	983	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	955	957	first strand
Strand 2	Z	479	483	anti-parallel
Strand 3	Z	451	455	anti-parallel
Strand 4	Z	971	972	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	460	462	first strand
Strand 2	Z	472	474	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	486	489	first strand
Strand 2	Z	894	898	anti-parallel
Strand 3	Z	880	883	anti-parallel
Strand 4	Z	503	504	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	509	517	first strand
Strand 2	Z	867	875	anti-parallel
Strand 3	Z	851	855	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	563	566	first strand
Strand 2	Z	570	573	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	603	605	first strand
Strand 2	Z	632	634	anti-parallel
Strand 3	Z	746	747	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	623	625	first strand
Strand 2	Z	773	778	anti-parallel
Strand 3	Z	797	800	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	638	639	first strand
Strand 2	Z	686	687	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	692	697	first strand
Strand 2	Z	739	742	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	903	904	first strand
Strand 2	Z	950	952	anti-parallel
Strand 3	Z	938	940	anti-parallel
Strand 4	Z	921	922	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1031	1032	first strand
Strand 2	Z	1044	1045	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1152	1154	first strand
Strand 2	Z	1136	1140	anti-parallel
Strand 3	Z	1174	1177	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	57	first strand
Strand 2	G	83	88	anti-parallel
Strand 3	G	22	28	anti-parallel
Strand 4	G	104	107	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	66	first strand
Strand 2	G	72	78	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	111	first strand
Strand 2	G	123	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SYI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYI