Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SYM entry

There are 2 chains in PDB entry 8SYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3GLY 924
B
 GLY 3PRO 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8SYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
582 597Right-handed alpha
Helix 3
AA3
A
608 619Right-handed alpha
Helix 4
AA4
A
626 643Right-handed alpha
Helix 5
AA5
A
649 664Right-handed alpha
Helix 6
AA6
A
667 689Right-handed alpha
Helix 7
AA7
A
694 712Right-handed alpha
Helix 8
AA8
A
713 715Right-handed 310
Helix 9
AA9
A
717 734Right-handed alpha
Helix 10
AB1
A
737 752Right-handed alpha
Helix 11
AB2
A
753 755Right-handed 310
Helix 12
AB3
A
768 783Right-handed alpha
Helix 13
AB4
A
795 808Right-handed alpha
Helix 14
AB5
A
815 832Right-handed alpha
Helix 15
AB6
A
845 850Right-handed alpha
Helix 16
AB7
A
853 882Right-handed alpha
Helix 17
AB8
A
883 902Right-handed alpha
Helix 18
AB9
A
906 923Right-handed alpha
Helix 19
AC1
B
23 30Right-handed alpha
Helix 20
AC2
B
46 55Right-handed alpha
Helix 21
AC3
B
99 111Right-handed alpha
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There are 3 sheets in PDB entry 8SYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
B
175 184anti-parallel
Strand 3
B
163 172anti-parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
5 10anti-parallel
Strand 6
B
37 40parallel
Strand 7
B
59 62parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 761first strand
Strand 2
A
764 767anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 81first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
114 117parallel
Strand 4
B
132 135parallel
Strand 5
B
124 127anti-parallel
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