Analysis of interatomic Contacts of Structural Units in PDB entry:
8SYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SYN entry

There are 3 chains in PDB entry 8SYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3GLY 924
B
 GLY 3PRO 186
C
 THR 3ILE 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8SYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
116 128Right-handed alpha
Helix 3
AA3
A
180 201Right-handed alpha
Helix 4
AA4
A
203 218Right-handed alpha
Helix 5
AA5
A
223 225Right-handed 310
Helix 6
AA6
A
226 254Right-handed alpha
Helix 7
AA7
A
270 286Right-handed alpha
Helix 8
AA8
A
289 300Right-handed alpha
Helix 9
AA9
A
301 307Right-handed 310
Helix 10
AB1
A
310 323Right-handed alpha
Helix 11
AB2
A
324 326Right-handed 310
Helix 12
AB3
A
328 347Right-handed alpha
Helix 13
AB4
A
350 365Right-handed alpha
Helix 14
AB5
A
366 368Right-handed 310
Helix 15
AB6
A
370 381Right-handed alpha
Helix 16
AB7
A
383 388Right-handed alpha
Helix 17
AB8
A
391 403Right-handed alpha
Helix 18
AB9
A
407 420Right-handed alpha
Helix 19
AC1
A
424 435Right-handed alpha
Helix 20
AC2
A
436 443Right-handed alpha
Helix 21
AC3
A
443 453Right-handed alpha
Helix 22
AC4
A
460 473Right-handed alpha
Helix 23
AC5
A
478 480Right-handed 310
Helix 24
AC6
A
481 494Right-handed alpha
Helix 25
AC7
A
498 517Right-handed alpha
Helix 26
AC8
A
518 534Right-handed alpha
Helix 27
AC9
A
537 541Right-handed 310
Helix 28
AD1
A
542 556Right-handed alpha
Helix 29
AD2
A
559 564Right-handed alpha
Helix 30
AD3
A
568 576Right-handed alpha
Helix 31
AD4
A
578 596Right-handed alpha
Helix 32
AD5
A
603 619Right-handed alpha
Helix 33
AD6
A
626 643Right-handed alpha
Helix 34
AD7
A
649 664Right-handed alpha
Helix 35
AD8
A
667 689Right-handed alpha
Helix 36
AD9
A
694 712Right-handed alpha
Helix 37
AE1
A
713 715Right-handed 310
Helix 38
AE2
A
717 734Right-handed alpha
Helix 39
AE3
A
738 752Right-handed alpha
Helix 40
AE4
A
753 755Right-handed 310
Helix 41
AE5
A
768 784Right-handed alpha
Helix 42
AE6
A
795 808Right-handed alpha
Helix 43
AE7
A
815 832Right-handed alpha
Helix 44
AE8
A
845 850Right-handed alpha
Helix 45
AE9
A
853 881Right-handed alpha
Helix 46
AF1
A
883 901Right-handed alpha
Helix 47
AF2
A
906 923Right-handed alpha
Helix 48
AF3
B
23 30Right-handed alpha
Helix 49
AF4
B
46 55Right-handed alpha
Helix 50
AF5
B
99 111Right-handed alpha
Helix 51
AF6
C
166 171Right-handed alpha
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There are 10 sheets in PDB entry 8SYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
B
175 184anti-parallel
Strand 3
B
163 172anti-parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
5 10anti-parallel
Strand 6
B
37 40parallel
Strand 7
B
59 62parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 761first strand
Strand 2
A
764 767anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 81first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
114 117parallel
Strand 4
B
131 135parallel
Strand 5
B
124 128anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
89 96anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
140 141parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 79first strand
Strand 2
C
39 49anti-parallel
Strand 3
C
114 124anti-parallel
Strand 4
C
109 110anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 79first strand
Strand 2
C
39 49anti-parallel
Strand 3
C
114 124anti-parallel
Strand 4
C
133 138anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 159first strand
Strand 2
C
176 182anti-parallel
Strand 3
C
193 202anti-parallel
Strand 4
C
247 252anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 239first strand
Strand 2
C
206 219anti-parallel
Strand 3
C
268 280anti-parallel
Strand 4
C
263 265anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 239first strand
Strand 2
C
206 219anti-parallel
Strand 3
C
268 280anti-parallel
Strand 4
C
284 292anti-parallel
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