Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SZ2 entry

There are 4 chains in PDB entry 8SZ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0CYS 241
B
 MET 0CYS 241
P
 GLY 6ASP 11
Q
 GLY 6ASP 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8SZ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
113 122Right-handed alpha
Helix 3
AA3
A
131 145Right-handed alpha
Helix 4
AA4
A
151 165Right-handed alpha
Helix 5
AA5
A
165 171Right-handed alpha
Helix 6
AA6
A
171 180Right-handed alpha
Helix 7
AA7
A
181 183Right-handed 310
Helix 8
AA8
A
192 201Right-handed alpha
Helix 9
AA9
A
201 209Right-handed alpha
Helix 10
AB1
A
210 212Right-handed 310
Helix 11
AB2
A
227 235Right-handed alpha
Helix 12
AB3
B
9 24Right-handed alpha
Helix 13
AB4
B
113 122Right-handed alpha
Helix 14
AB5
B
131 145Right-handed alpha
Helix 15
AB6
B
151 165Right-handed alpha
Helix 16
AB7
B
165 171Right-handed alpha
Helix 17
AB8
B
171 180Right-handed alpha
Helix 18
AB9
B
181 183Right-handed 310
Helix 19
AC1
B
192 201Right-handed alpha
Helix 20
AC2
B
201 209Right-handed alpha
Helix 21
AC3
B
210 212Right-handed 310
Helix 22
AC4
B
227 235Right-handed alpha
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There are 8 sheets in PDB entry 8SZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 6first strand
Strand 2
A
49 55parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
88 91anti-parallel
Strand 6
A
104 107parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 33first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
237 238parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
189 190anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
223 225anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 6first strand
Strand 2
B
49 55parallel
Strand 3
B
67 72anti-parallel
Strand 4
B
77 83anti-parallel
Strand 5
B
88 91anti-parallel
Strand 6
B
104 107parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 33first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
237 238parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
189 190anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 220first strand
Strand 2
B
223 225anti-parallel
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