Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SZ6 entry

There are 2 chains in PDB entry 8SZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 378
B
 SER 502GLN 878
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8SZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
29 38Right-handed alpha
Helix 4
AA4
A
43 51Right-handed alpha
Helix 5
AA5
A
85 99Right-handed alpha
Helix 6
AA6
A
123 134Right-handed alpha
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
146 152Right-handed alpha
Helix 9
AA9
A
186 206Right-handed alpha
Helix 10
AB1
A
230 235Right-handed alpha
Helix 11
AB2
A
240 258Right-handed alpha
Helix 12
AB3
A
258 280Right-handed alpha
Helix 13
AB4
A
283 296Right-handed alpha
Helix 14
AB5
A
335 346Right-handed alpha
Helix 15
AB6
A
349 374Right-handed alpha
Helix 16
AB7
B
509 513Right-handed 310
Helix 17
AB8
B
514 527Right-handed alpha
Helix 18
AB9
B
529 535Right-handed alpha
Helix 19
AC1
B
543 551Right-handed alpha
Helix 20
AC2
B
585 599Right-handed alpha
Helix 21
AC3
B
623 634Right-handed alpha
Helix 22
AC4
B
634 643Right-handed alpha
Helix 23
AC5
B
646 652Right-handed alpha
Helix 24
AC6
B
686 706Right-handed alpha
Helix 25
AC7
B
730 735Right-handed alpha
Helix 26
AC8
B
740 758Right-handed alpha
Helix 27
AC9
B
758 780Right-handed alpha
Helix 28
AD1
B
783 796Right-handed alpha
Helix 29
AD2
B
830 835Right-handed alpha
Helix 30
AD3
B
835 846Right-handed alpha
Helix 31
AD4
B
849 875Right-handed alpha
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There are 7 sheets in PDB entry 8SZ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
54 65anti-parallel
Strand 3
B
554 565anti-parallel
Strand 4
B
577 580anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
73 74anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
222 229anti-parallel
Strand 3
A
315 322anti-parallel
Strand 4
A
305 309anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 164first strand
Strand 2
A
172 180anti-parallel
Strand 3
A
111 119anti-parallel
Strand 4
A
208 214anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 570first strand
Strand 2
B
573 574anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
604 607first strand
Strand 2
B
722 729anti-parallel
Strand 3
B
815 822anti-parallel
Strand 4
B
805 809anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
655 664first strand
Strand 2
B
672 680anti-parallel
Strand 3
B
611 619anti-parallel
Strand 4
B
708 714anti-parallel
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