Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SZF entry

There are 2 chains in PDB entry 8SZF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 20	CYS 874
B	TYR 20	THR 876

There are 57 helices in PDB entry 8SZF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	84	Right-handed alpha
Helix 2	AA2	A	103	115	Right-handed alpha
Helix 3	AA3	A	115	123	Right-handed alpha
Helix 4	AA4	A	146	158	Right-handed alpha
Helix 5	AA5	A	171	176	Right-handed 310
Helix 6	AA6	A	190	204	Right-handed alpha
Helix 7	AA7	A	218	233	Right-handed alpha
Helix 8	AA8	A	248	261	Right-handed alpha
Helix 9	AA9	A	272	287	Right-handed alpha
Helix 10	AB1	A	307	309	Right-handed 310
Helix 11	AB2	A	310	315	Right-handed alpha
Helix 12	AB3	A	329	335	Right-handed alpha
Helix 13	AB4	A	347	357	Right-handed alpha
Helix 14	AB5	A	415	436	Right-handed alpha
Helix 15	AB6	A	451	455	Right-handed 310
Helix 16	AB7	A	456	466	Right-handed alpha
Helix 17	AB8	A	525	528	Right-handed 310
Helix 18	AB9	A	610	637	Right-handed alpha
Helix 19	AC1	A	640	646	Right-handed alpha
Helix 20	AC2	A	647	667	Right-handed alpha
Helix 21	AC3	A	673	697	Right-handed alpha
Helix 22	AC4	A	723	746	Right-handed alpha
Helix 23	AC5	A	769	794	Right-handed alpha
Helix 24	AC6	A	802	821	Right-handed alpha
Helix 25	AC7	A	821	826	Right-handed alpha
Helix 26	AC8	A	831	862	Right-handed alpha
Helix 27	AC9	B	64	84	Right-handed alpha
Helix 28	AD1	B	103	115	Right-handed alpha
Helix 29	AD2	B	118	123	Right-handed alpha
Helix 30	AD3	B	146	158	Right-handed alpha
Helix 31	AD4	B	171	176	Right-handed 310
Helix 32	AD5	B	190	204	Right-handed alpha
Helix 33	AD6	B	218	232	Right-handed alpha
Helix 34	AD7	B	248	261	Right-handed alpha
Helix 35	AD8	B	272	287	Right-handed alpha
Helix 36	AD9	B	307	309	Right-handed 310
Helix 37	AE1	B	310	315	Right-handed alpha
Helix 38	AE2	B	329	335	Right-handed alpha
Helix 39	AE3	B	347	357	Right-handed alpha
Helix 40	AE4	B	400	404	Right-handed 310
Helix 41	AE5	B	415	436	Right-handed alpha
Helix 42	AE6	B	444	448	Right-handed 310
Helix 43	AE7	B	451	455	Right-handed 310
Helix 44	AE8	B	456	466	Right-handed alpha
Helix 45	AE9	B	525	528	Right-handed 310
Helix 46	AF1	B	529	533	Right-handed 310
Helix 47	AF2	B	610	637	Right-handed alpha
Helix 48	AF3	B	640	645	Right-handed alpha
Helix 49	AF4	B	647	666	Right-handed alpha
Helix 50	AF5	B	673	678	Right-handed alpha
Helix 51	AF6	B	679	698	Right-handed alpha
Helix 52	AF7	B	721	725	Right-handed alpha
Helix 53	AF8	B	726	746	Right-handed alpha
Helix 54	AF9	B	769	794	Right-handed alpha
Helix 55	AG1	B	802	828	Right-handed alpha
Helix 56	AG2	B	832	861	Right-handed alpha
Helix 57	AG3	B	870	876	Right-handed alpha

There are 14 sheets in PDB entry 8SZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	32	38	parallel
Strand 4	A	138	142	parallel
Strand 5	A	164	166	parallel
Strand 6	A	183	185	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	208	214	parallel
Strand 3	A	266	270	parallel
Strand 4	A	292	295	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	521	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	476	477	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	566	567	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	591	first strand
Strand 2	A	598	600	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	760	766	parallel
Strand 3	A	749	753	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	93	99	anti-parallel
Strand 3	B	32	38	parallel
Strand 4	B	138	142	parallel
Strand 5	B	164	166	parallel
Strand 6	B	183	185	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	266	270	parallel
Strand 4	B	292	295	parallel
Strand 5	B	318	321	parallel
Strand 6	B	489	496	anti-parallel
Strand 7	B	503	511	anti-parallel
Strand 8	B	521	523	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	476	478	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	554	first strand
Strand 2	B	563	567	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	573	first strand
Strand 2	B	583	584	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	591	first strand
Strand 2	B	598	600	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	760	766	parallel
Strand 3	B	749	753	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SZF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZF