Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SZG entry

There are 5 chains in PDB entry 8SZG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 6	ASN 340
E	ILE 9	GLU 63
A	TYR 20	ARG 890
B	TYR 20	GLU 871
C	LYS 16	VAL 359

There are 73 helices in PDB entry 8SZG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	6	26	Right-handed alpha
Helix 2	AA2	D	280	282	Right-handed 310
Helix 3	AA3	E	10	24	Right-handed alpha
Helix 4	AA4	E	29	44	Right-handed alpha
Helix 5	AA5	A	64	84	Right-handed alpha
Helix 6	AA6	A	103	115	Right-handed alpha
Helix 7	AA7	A	115	120	Right-handed alpha
Helix 8	AA8	A	146	158	Right-handed alpha
Helix 9	AA9	A	172	176	Right-handed 310
Helix 10	AB1	A	190	204	Right-handed alpha
Helix 11	AB2	A	218	233	Right-handed alpha
Helix 12	AB3	A	248	261	Right-handed alpha
Helix 13	AB4	A	272	287	Right-handed alpha
Helix 14	AB5	A	307	309	Right-handed 310
Helix 15	AB6	A	310	315	Right-handed alpha
Helix 16	AB7	A	329	335	Right-handed alpha
Helix 17	AB8	A	347	357	Right-handed alpha
Helix 18	AB9	A	400	404	Right-handed 310
Helix 19	AC1	A	415	436	Right-handed alpha
Helix 20	AC2	A	451	455	Right-handed 310
Helix 21	AC3	A	456	466	Right-handed alpha
Helix 22	AC4	A	525	528	Right-handed 310
Helix 23	AC5	A	610	637	Right-handed alpha
Helix 24	AC6	A	640	646	Right-handed alpha
Helix 25	AC7	A	649	665	Right-handed alpha
Helix 26	AC8	A	666	668	Right-handed 310
Helix 27	AC9	A	673	706	Right-handed alpha
Helix 28	AD1	A	716	746	Right-handed alpha
Helix 29	AD2	A	770	794	Right-handed alpha
Helix 30	AD3	A	804	821	Right-handed alpha
Helix 31	AD4	A	821	828	Right-handed alpha
Helix 32	AD5	A	831	863	Right-handed alpha
Helix 33	AD6	A	864	867	Right-handed 310
Helix 34	AD7	A	868	883	Right-handed alpha
Helix 35	AD8	B	64	84	Right-handed alpha
Helix 36	AD9	B	103	115	Right-handed alpha
Helix 37	AE1	B	115	120	Right-handed alpha
Helix 38	AE2	B	146	158	Right-handed alpha
Helix 39	AE3	B	159	161	Right-handed 310
Helix 40	AE4	B	171	176	Right-handed 310
Helix 41	AE5	B	190	204	Right-handed alpha
Helix 42	AE6	B	218	233	Right-handed alpha
Helix 43	AE7	B	248	262	Right-handed alpha
Helix 44	AE8	B	272	287	Right-handed alpha
Helix 45	AE9	B	307	309	Right-handed 310
Helix 46	AF1	B	310	315	Right-handed alpha
Helix 47	AF2	B	329	336	Right-handed alpha
Helix 48	AF3	B	347	357	Right-handed alpha
Helix 49	AF4	B	400	404	Right-handed 310
Helix 50	AF5	B	416	436	Right-handed alpha
Helix 51	AF6	B	444	448	Right-handed 310
Helix 52	AF7	B	456	466	Right-handed alpha
Helix 53	AF8	B	525	528	Right-handed 310
Helix 54	AF9	B	529	533	Right-handed 310
Helix 55	AG1	B	610	637	Right-handed alpha
Helix 56	AG2	B	640	646	Right-handed alpha
Helix 57	AG3	B	647	666	Right-handed alpha
Helix 58	AG4	B	667	669	Right-handed 310
Helix 59	AG5	B	673	698	Right-handed alpha
Helix 60	AG6	B	701	706	Right-handed alpha
Helix 61	AG7	B	723	746	Right-handed alpha
Helix 62	AG8	B	770	794	Right-handed alpha
Helix 63	AG9	B	802	826	Right-handed alpha
Helix 64	AH1	B	832	862	Right-handed alpha
Helix 65	AH2	C	17	36	Right-handed alpha
Helix 66	AH3	C	51	62	Right-handed alpha
Helix 67	AH4	C	216	220	Right-handed 310
Helix 68	AH5	C	233	236	Right-handed 310
Helix 69	AH6	C	246	261	Right-handed alpha
Helix 70	AH7	C	275	282	Right-handed alpha
Helix 71	AH8	C	287	292	Right-handed alpha
Helix 72	AH9	C	306	316	Right-handed alpha
Helix 73	AI1	C	336	356	Right-handed alpha

There are 24 sheets in PDB entry 8SZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	336	340	anti-parallel
Strand 3	D	327	329	anti-parallel
Strand 4	D	318	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	91	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	111	113	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	151	first strand
Strand 2	D	156	160	anti-parallel
Strand 3	D	165	170	anti-parallel
Strand 4	D	178	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	221	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	295	298	anti-parallel
Strand 4	D	303	306	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	32	38	parallel
Strand 4	A	140	142	parallel
Strand 5	A	164	166	parallel
Strand 6	A	183	185	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	208	214	parallel
Strand 3	A	266	270	parallel
Strand 4	A	292	295	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	521	523	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	476	478	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	566	567	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	583	584	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	590	first strand
Strand 2	A	599	600	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	760	766	parallel
Strand 3	A	749	753	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	93	99	anti-parallel
Strand 3	B	32	38	parallel
Strand 4	B	138	142	parallel
Strand 5	B	164	166	parallel
Strand 6	B	183	185	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	266	270	parallel
Strand 4	B	292	295	parallel
Strand 5	B	318	321	parallel
Strand 6	B	489	496	anti-parallel
Strand 7	B	503	511	anti-parallel
Strand 8	B	521	523	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	476	478	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	566	567	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	591	first strand
Strand 2	B	598	600	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	760	762	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	750	first strand
Strand 2	B	765	766	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	44	first strand
Strand 2	C	200	205	parallel
Strand 3	C	191	193	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	231	first strand
Strand 2	C	268	274	parallel
Strand 3	C	324	325	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SZG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZG