Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SZI entry

There are 5 chains in PDB entry 8SZI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 7	TYR 354
D	GLU 3	ASN 340
E	ALA 7	GLU 63
A	TYR 20	ALA 887
B	TYR 20	THR 876

There are 74 helices in PDB entry 8SZI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	7	31	Right-handed alpha
Helix 2	AA2	C	45	54	Right-handed alpha
Helix 3	AA3	C	207	213	Right-handed alpha
Helix 4	AA4	C	228	232	Right-handed 310
Helix 5	AA5	C	241	255	Right-handed alpha
Helix 6	AA6	C	270	279	Right-handed alpha
Helix 7	AA7	C	282	286	Right-handed 310
Helix 8	AA8	C	295	309	Right-handed alpha
Helix 9	AA9	C	329	351	Right-handed alpha
Helix 10	AB1	D	4	25	Right-handed alpha
Helix 11	AB2	D	29	34	Right-handed alpha
Helix 12	AB3	D	280	282	Right-handed 310
Helix 13	AB4	E	8	24	Right-handed alpha
Helix 14	AB5	E	29	44	Right-handed alpha
Helix 15	AB6	E	45	48	Right-handed 310
Helix 16	AB7	A	64	83	Right-handed alpha
Helix 17	AB8	A	103	115	Right-handed alpha
Helix 18	AB9	A	146	158	Right-handed alpha
Helix 19	AC1	A	171	176	Right-handed 310
Helix 20	AC2	A	190	204	Right-handed alpha
Helix 21	AC3	A	218	233	Right-handed alpha
Helix 22	AC4	A	248	261	Right-handed alpha
Helix 23	AC5	A	272	286	Right-handed alpha
Helix 24	AC6	A	307	309	Right-handed 310
Helix 25	AC7	A	310	315	Right-handed alpha
Helix 26	AC8	A	329	335	Right-handed alpha
Helix 27	AC9	A	347	357	Right-handed alpha
Helix 28	AD1	A	415	436	Right-handed alpha
Helix 29	AD2	A	456	466	Right-handed alpha
Helix 30	AD3	A	525	528	Right-handed 310
Helix 31	AD4	A	610	637	Right-handed alpha
Helix 32	AD5	A	640	646	Right-handed alpha
Helix 33	AD6	A	647	664	Right-handed alpha
Helix 34	AD7	A	665	669	Right-handed 310
Helix 35	AD8	A	673	678	Right-handed alpha
Helix 36	AD9	A	679	708	Right-handed alpha
Helix 37	AE1	A	720	746	Right-handed alpha
Helix 38	AE2	A	770	794	Right-handed alpha
Helix 39	AE3	A	806	821	Right-handed alpha
Helix 40	AE4	A	821	828	Right-handed alpha
Helix 41	AE5	A	831	862	Right-handed alpha
Helix 42	AE6	A	863	867	Right-handed 310
Helix 43	AE7	A	868	878	Right-handed alpha
Helix 44	AE8	B	66	84	Right-handed alpha
Helix 45	AE9	B	103	112	Right-handed alpha
Helix 46	AF1	B	146	158	Right-handed alpha
Helix 47	AF2	B	171	176	Right-handed 310
Helix 48	AF3	B	190	204	Right-handed alpha
Helix 49	AF4	B	218	233	Right-handed alpha
Helix 50	AF5	B	248	260	Right-handed alpha
Helix 51	AF6	B	272	287	Right-handed alpha
Helix 52	AF7	B	307	309	Right-handed 310
Helix 53	AF8	B	310	315	Right-handed alpha
Helix 54	AF9	B	329	335	Right-handed alpha
Helix 55	AG1	B	347	357	Right-handed alpha
Helix 56	AG2	B	400	404	Right-handed 310
Helix 57	AG3	B	416	436	Right-handed alpha
Helix 58	AG4	B	444	448	Right-handed 310
Helix 59	AG5	B	451	455	Right-handed 310
Helix 60	AG6	B	456	466	Right-handed alpha
Helix 61	AG7	B	525	528	Right-handed 310
Helix 62	AG8	B	529	533	Right-handed 310
Helix 63	AG9	B	610	637	Right-handed alpha
Helix 64	AH1	B	640	646	Right-handed alpha
Helix 65	AH2	B	647	665	Right-handed alpha
Helix 66	AH3	B	666	668	Right-handed 310
Helix 67	AH4	B	673	698	Right-handed alpha
Helix 68	AH5	B	702	707	Right-handed alpha
Helix 69	AH6	B	723	746	Right-handed alpha
Helix 70	AH7	B	769	794	Right-handed alpha
Helix 71	AH8	B	798	828	Right-handed alpha
Helix 72	AH9	B	830	833	Right-handed 310
Helix 73	AI1	B	834	861	Right-handed alpha
Helix 74	AI2	B	870	876	Right-handed alpha

There are 23 sheets in PDB entry 8SZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	195	200	anti-parallel
Strand 3	C	34	38	parallel
Strand 4	C	220	226	parallel
Strand 5	C	263	269	parallel
Strand 6	C	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	336	340	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	70	74	anti-parallel
Strand 3	D	79	81	anti-parallel
Strand 4	D	91	92	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	111	113	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	135	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	165	170	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	220	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	306	308	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	32	38	parallel
Strand 4	A	138	142	parallel
Strand 5	A	164	166	parallel
Strand 6	A	183	185	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	208	214	parallel
Strand 3	A	266	270	parallel
Strand 4	A	292	295	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	521	523	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	476	478	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	554	first strand
Strand 2	A	563	567	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	583	584	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	591	first strand
Strand 2	A	598	600	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	760	766	parallel
Strand 3	A	749	753	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	93	99	anti-parallel
Strand 3	B	32	38	parallel
Strand 4	B	138	142	parallel
Strand 5	B	164	166	parallel
Strand 6	B	183	185	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	266	270	parallel
Strand 4	B	292	295	parallel
Strand 5	B	318	321	parallel
Strand 6	B	489	496	anti-parallel
Strand 7	B	503	511	anti-parallel
Strand 8	B	521	523	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	476	478	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	554	first strand
Strand 2	B	563	567	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	573	first strand
Strand 2	B	583	584	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	591	first strand
Strand 2	B	598	600	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	760	766	parallel
Strand 3	B	749	753	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SZI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZI