Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SZL entry

There are 3 chains in PDB entry 8SZL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 69	GLN 576
B	LEU 69	GLN 576
C	LEU 69	LEU 466

There are 98 helices in PDB entry 8SZL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	81	Right-handed alpha
Helix 2	AA2	A	89	94	Right-handed alpha
Helix 3	AA3	A	108	122	Right-handed alpha
Helix 4	AA4	A	129	137	Right-handed alpha
Helix 5	AA5	A	140	149	Right-handed alpha
Helix 6	AA6	A	156	171	Right-handed alpha
Helix 7	AA7	A	220	234	Right-handed alpha
Helix 8	AA8	A	234	239	Right-handed alpha
Helix 9	AA9	A	267	276	Right-handed alpha
Helix 10	AB1	A	283	299	Right-handed alpha
Helix 11	AB2	A	308	313	Right-handed alpha
Helix 12	AB3	A	318	331	Right-handed alpha
Helix 13	AB4	A	339	352	Right-handed alpha
Helix 14	AB5	A	356	363	Right-handed alpha
Helix 15	AB6	A	382	397	Right-handed alpha
Helix 16	AB7	A	401	409	Right-handed alpha
Helix 17	AB8	A	444	459	Right-handed alpha
Helix 18	AB9	A	481	496	Right-handed alpha
Helix 19	AC1	A	498	508	Right-handed alpha
Helix 20	AC2	A	521	530	Right-handed alpha
Helix 21	AC3	A	531	541	Right-handed alpha
Helix 22	AC4	A	555	564	Right-handed alpha
Helix 23	AC5	A	566	574	Right-handed alpha
Helix 24	AC6	B	72	81	Right-handed alpha
Helix 25	AC7	B	89	94	Right-handed alpha
Helix 26	AC8	B	105	107	Right-handed 310
Helix 27	AC9	B	108	122	Right-handed alpha
Helix 28	AD1	B	129	137	Right-handed alpha
Helix 29	AD2	B	140	149	Right-handed alpha
Helix 30	AD3	B	156	171	Right-handed alpha
Helix 31	AD4	B	221	234	Right-handed alpha
Helix 32	AD5	B	237	241	Right-handed 310
Helix 33	AD6	B	267	276	Right-handed alpha
Helix 34	AD7	B	283	295	Right-handed alpha
Helix 35	AD8	B	308	313	Right-handed alpha
Helix 36	AD9	B	318	332	Right-handed alpha
Helix 37	AE1	B	339	352	Right-handed alpha
Helix 38	AE2	B	356	363	Right-handed alpha
Helix 39	AE3	B	364	369	Right-handed alpha
Helix 40	AE4	B	382	397	Right-handed alpha
Helix 41	AE5	B	398	400	Right-handed 310
Helix 42	AE6	B	401	409	Right-handed alpha
Helix 43	AE7	B	445	459	Right-handed alpha
Helix 44	AE8	B	480	492	Right-handed alpha
Helix 45	AE9	B	498	508	Right-handed alpha
Helix 46	AF1	B	521	528	Right-handed alpha
Helix 47	AF2	B	531	541	Right-handed alpha
Helix 48	AF3	B	555	563	Right-handed alpha
Helix 49	AF4	B	566	573	Right-handed alpha
Helix 50	AF5	C	71	73	Right-handed 310
Helix 51	AF6	C	74	82	Right-handed alpha
Helix 52	AF7	C	88	98	Right-handed alpha
Helix 53	AF8	C	108	122	Right-handed alpha
Helix 54	AF9	C	129	137	Right-handed alpha
Helix 55	AG1	C	140	149	Right-handed alpha
Helix 56	AG2	C	156	174	Right-handed alpha
Helix 57	AG3	C	220	233	Right-handed alpha
Helix 58	AG4	C	234	239	Right-handed alpha
Helix 59	AG5	C	267	278	Right-handed alpha
Helix 60	AG6	C	283	300	Right-handed alpha
Helix 61	AG7	C	307	316	Right-handed alpha
Helix 62	AG8	C	318	331	Right-handed alpha
Helix 63	AG9	C	339	352	Right-handed alpha
Helix 64	AH1	C	356	369	Right-handed alpha
Helix 65	AH2	C	382	397	Right-handed alpha
Helix 66	AH3	C	398	400	Right-handed 310
Helix 67	AH4	C	401	409	Right-handed alpha
Helix 68	AH5	C	444	456	Right-handed alpha
Helix 69	AH6	C	486	497	Right-handed alpha
Helix 70	AH7	C	498	508	Right-handed alpha
Helix 71	AH8	C	522	530	Right-handed alpha
Helix 72	AH9	C	531	542	Right-handed alpha
Helix 73	AI1	C	555	563	Right-handed alpha
Helix 74	AI2	C	565	574	Right-handed alpha
Helix 75	AI3	D	72	82	Right-handed alpha
Helix 76	AI4	D	89	98	Right-handed alpha
Helix 77	AI5	D	105	107	Right-handed 310
Helix 78	AI6	D	108	120	Right-handed alpha
Helix 79	AI7	D	129	138	Right-handed alpha
Helix 80	AI8	D	140	149	Right-handed alpha
Helix 81	AI9	D	156	172	Right-handed alpha
Helix 82	AJ1	D	220	233	Right-handed alpha
Helix 83	AJ2	D	234	239	Right-handed alpha
Helix 84	AJ3	D	267	278	Right-handed alpha
Helix 85	AJ4	D	283	300	Right-handed alpha
Helix 86	AJ5	D	307	316	Right-handed alpha
Helix 87	AJ6	D	318	331	Right-handed alpha
Helix 88	AJ7	D	339	352	Right-handed alpha
Helix 89	AJ8	D	356	369	Right-handed alpha
Helix 90	AJ9	D	382	397	Right-handed alpha
Helix 91	AK1	D	401	409	Right-handed alpha
Helix 92	AK2	D	444	456	Right-handed alpha
Helix 93	AK3	D	486	497	Right-handed alpha
Helix 94	AK4	D	498	507	Right-handed alpha
Helix 95	AK5	D	521	530	Right-handed alpha
Helix 96	AK6	D	531	542	Right-handed alpha
Helix 97	AK7	D	555	564	Right-handed alpha
Helix 98	AK8	D	565	574	Right-handed alpha

There are 12 sheets in PDB entry 8SZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	127	128	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	209	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	429	434	anti-parallel
Strand 4	A	420	425	anti-parallel
Strand 5	A	413	415	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	353	355	anti-parallel
Strand 3	A	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	127	128	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	209	first strand
Strand 2	B	195	200	anti-parallel
Strand 3	B	429	434	anti-parallel
Strand 4	B	420	425	anti-parallel
Strand 5	B	413	415	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	353	355	anti-parallel
Strand 3	B	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	439	first strand
Strand 2	B	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	209	first strand
Strand 2	C	195	200	anti-parallel
Strand 3	C	429	434	anti-parallel
Strand 4	C	421	425	anti-parallel
Strand 5	C	413	415	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	353	355	anti-parallel
Strand 3	C	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	127	128	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	209	first strand
Strand 2	D	195	200	anti-parallel
Strand 3	D	429	434	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	413	415	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	216	first strand
Strand 2	D	353	355	anti-parallel
Strand 3	D	305	306	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SZL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZL