Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SZP entry

There are 2 chains in PDB entry 8SZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 272TYR 1152
B
 THR 270ILE 1150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 81 helices in PDB entry 8SZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
279 294Right-handed alpha
Helix 2
AA2
A
356 375Right-handed alpha
Helix 3
AA3
A
375 386Right-handed alpha
Helix 4
AA4
A
387 392Right-handed 310
Helix 5
AA5
A
393 404Right-handed alpha
Helix 6
AA6
A
416 432Right-handed alpha
Helix 7
AA7
A
434 437Right-handed 310
Helix 8
AA8
A
446 461Right-handed alpha
Helix 9
AA9
A
491 498Right-handed alpha
Helix 10
AB1
A
512 516Right-handed 310
Helix 11
AB2
A
517 534Right-handed alpha
Helix 12
AB3
A
548 555Right-handed alpha
Helix 13
AB4
A
574 583Right-handed alpha
Helix 14
AB5
A
617 625Right-handed alpha
Helix 15
AB6
A
633 646Right-handed alpha
Helix 16
AB7
A
658 672Right-handed alpha
Helix 17
AB8
A
673 677Right-handed 310
Helix 18
AB9
A
691 696Right-handed alpha
Helix 19
AC1
A
697 699Right-handed 310
Helix 20
AC2
A
714 719Right-handed alpha
Helix 21
AC3
A
754 763Right-handed alpha
Helix 22
AC4
A
764 766Right-handed 310
Helix 23
AC5
A
778 784Right-handed alpha
Helix 24
AC6
A
791 795Right-handed 310
Helix 25
AC7
A
798 808Right-handed alpha
Helix 26
AC8
A
812 818Right-handed alpha
Helix 27
AC9
A
825 839Right-handed alpha
Helix 28
AD1
A
849 858Right-handed alpha
Helix 29
AD2
A
861 874Right-handed alpha
Helix 30
AD3
A
876 888Right-handed alpha
Helix 31
AD4
A
901 909Right-handed alpha
Helix 32
AD5
A
913 929Right-handed alpha
Helix 33
AD6
A
932 943Right-handed alpha
Helix 34
AD7
A
946 968Right-handed alpha
Helix 35
AD8
A
970 975Right-handed 310
Helix 36
AD9
A
985 1000Right-handed alpha
Helix 37
AE1
A
1063 1071Right-handed alpha
Helix 38
AE2
A
1093 1117Right-handed alpha
Helix 39
AE3
A
1118 1124Right-handed 310
Helix 40
AE4
A
1125 1140Right-handed alpha
Helix 41
AE5
A
1141 1145Right-handed 310
Helix 42
AE6
B
279 294Right-handed alpha
Helix 43
AE7
B
356 375Right-handed alpha
Helix 44
AE8
B
375 386Right-handed alpha
Helix 45
AE9
B
388 392Right-handed 310
Helix 46
AF1
B
393 404Right-handed alpha
Helix 47
AF2
B
416 432Right-handed alpha
Helix 48
AF3
B
434 437Right-handed 310
Helix 49
AF4
B
446 460Right-handed alpha
Helix 50
AF5
B
491 498Right-handed alpha
Helix 51
AF6
B
499 501Right-handed 310
Helix 52
AF7
B
512 516Right-handed 310
Helix 53
AF8
B
517 534Right-handed alpha
Helix 54
AF9
B
548 555Right-handed alpha
Helix 55
AG1
B
574 581Right-handed alpha
Helix 56
AG2
B
617 625Right-handed alpha
Helix 57
AG3
B
633 645Right-handed alpha
Helix 58
AG4
B
659 672Right-handed alpha
Helix 59
AG5
B
691 696Right-handed alpha
Helix 60
AG6
B
714 719Right-handed alpha
Helix 61
AG7
B
754 763Right-handed alpha
Helix 62
AG8
B
778 784Right-handed alpha
Helix 63
AG9
B
791 795Right-handed 310
Helix 64
AH1
B
798 808Right-handed alpha
Helix 65
AH2
B
812 818Right-handed alpha
Helix 66
AH3
B
825 839Right-handed alpha
Helix 67
AH4
B
849 858Right-handed alpha
Helix 68
AH5
B
861 874Right-handed alpha
Helix 69
AH6
B
876 886Right-handed alpha
Helix 70
AH7
B
887 889Right-handed 310
Helix 71
AH8
B
901 908Right-handed alpha
Helix 72
AH9
B
913 929Right-handed alpha
Helix 73
AI1
B
932 943Right-handed alpha
Helix 74
AI2
B
946 967Right-handed alpha
Helix 75
AI3
B
970 975Right-handed 310
Helix 76
AI4
B
985 999Right-handed alpha
Helix 77
AI5
B
1063 1071Right-handed alpha
Helix 78
AI6
B
1093 1117Right-handed alpha
Helix 79
AI7
B
1118 1122Right-handed 310
Helix 80
AI8
B
1125 1139Right-handed alpha
Helix 81
AI9
B
1140 1145Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 8SZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
1088 1091parallel
Strand 3
A
1081 1084anti-parallel
Strand 4
A
1075 1077anti-parallel
Strand 5
A
308 309anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
502 503parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
469 473anti-parallel
Strand 3
A
485 490parallel
Strand 4
A
439 444parallel
Strand 5
A
507 510parallel
Strand 6
A
538 543parallel
Strand 7
A
406 411parallel
Strand 8
A
560 563parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 573first strand
Strand 2
A
771 775parallel
Strand 3
A
725 730parallel
Strand 4
A
652 656parallel
Strand 5
A
707 712parallel
Strand 6
A
681 686parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
733 736first strand
Strand 2
A
748 752anti-parallel
Strand 3
A
1047 1050parallel
Strand 4
A
1054 1057anti-parallel
Strand 5
A
1019 1022parallel
Strand 6
A
1011 1013anti-parallel
Strand 7
A
1003 1008anti-parallel
Strand 8
A
1042 1044anti-parallel
Strand 9
A
1060 1061anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
1088 1091parallel
Strand 3
B
1081 1084anti-parallel
Strand 4
B
1075 1077anti-parallel
Strand 5
B
308 309anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
502 503parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 478first strand
Strand 2
B
469 473anti-parallel
Strand 3
B
485 490parallel
Strand 4
B
439 444parallel
Strand 5
B
507 510parallel
Strand 6
B
538 543parallel
Strand 7
B
406 411parallel
Strand 8
B
560 563parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 573first strand
Strand 2
B
771 775parallel
Strand 3
B
725 730parallel
Strand 4
B
652 656parallel
Strand 5
B
707 712parallel
Strand 6
B
681 686parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
733 740first strand
Strand 2
B
745 752anti-parallel
Strand 3
B
1042 1050parallel
Strand 4
B
1054 1061anti-parallel
Strand 5
B
1019 1022parallel
Strand 6
B
1011 1013anti-parallel
Strand 7
B
1003 1008anti-parallel
Strand 8
B
1042 1050anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il