Analysis of interatomic Contacts of Structural Units in PDB entry:
8SZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SZQ entry

There is 1 chain in PDB entry 8SZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 270TYR 1153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8SZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
280 295Right-handed alpha
Helix 2
AA2
A
357 376Right-handed alpha
Helix 3
AA3
A
376 387Right-handed alpha
Helix 4
AA4
A
388 393Right-handed 310
Helix 5
AA5
A
394 405Right-handed alpha
Helix 6
AA6
A
417 433Right-handed alpha
Helix 7
AA7
A
435 438Right-handed 310
Helix 8
AA8
A
447 462Right-handed alpha
Helix 9
AA9
A
492 499Right-handed alpha
Helix 10
AB1
A
514 517Right-handed 310
Helix 11
AB2
A
518 535Right-handed alpha
Helix 12
AB3
A
549 556Right-handed alpha
Helix 13
AB4
A
575 584Right-handed alpha
Helix 14
AB5
A
618 626Right-handed alpha
Helix 15
AB6
A
634 646Right-handed alpha
Helix 16
AB7
A
660 674Right-handed alpha
Helix 17
AB8
A
675 678Right-handed 310
Helix 18
AB9
A
692 697Right-handed alpha
Helix 19
AC1
A
698 700Right-handed 310
Helix 20
AC2
A
715 720Right-handed alpha
Helix 21
AC3
A
755 765Right-handed alpha
Helix 22
AC4
A
779 785Right-handed alpha
Helix 23
AC5
A
792 796Right-handed 310
Helix 24
AC6
A
799 809Right-handed alpha
Helix 25
AC7
A
813 819Right-handed alpha
Helix 26
AC8
A
826 840Right-handed alpha
Helix 27
AC9
A
850 859Right-handed alpha
Helix 28
AD1
A
862 875Right-handed alpha
Helix 29
AD2
A
877 888Right-handed alpha
Helix 30
AD3
A
902 908Right-handed alpha
Helix 31
AD4
A
914 930Right-handed alpha
Helix 32
AD5
A
933 944Right-handed alpha
Helix 33
AD6
A
947 969Right-handed alpha
Helix 34
AD7
A
971 975Right-handed 310
Helix 35
AD8
A
986 1001Right-handed alpha
Helix 36
AD9
A
1064 1072Right-handed alpha
Helix 37
AE1
A
1094 1118Right-handed alpha
Helix 38
AE2
A
1119 1123Right-handed 310
Helix 39
AE3
A
1126 1140Right-handed alpha
Helix 40
AE4
A
1141 1146Right-handed 310
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There are 7 sheets in PDB entry 8SZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
1089 1092parallel
Strand 3
A
1082 1085anti-parallel
Strand 4
A
1076 1078anti-parallel
Strand 5
A
309 310anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
503 504parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
346 347anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 479first strand
Strand 2
A
470 474anti-parallel
Strand 3
A
486 491parallel
Strand 4
A
440 445parallel
Strand 5
A
508 512parallel
Strand 6
A
539 544parallel
Strand 7
A
407 412parallel
Strand 8
A
561 564parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 574first strand
Strand 2
A
772 776parallel
Strand 3
A
726 731parallel
Strand 4
A
653 657parallel
Strand 5
A
708 713parallel
Strand 6
A
682 687parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 741first strand
Strand 2
A
746 753anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1004 1009first strand
Strand 2
A
1012 1014anti-parallel
Strand 3
A
1020 1023anti-parallel
Strand 4
A
1055 1062parallel
Strand 5
A
1043 1051anti-parallel
Strand 6
A
1004 1009anti-parallel
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