Analysis of interatomic Contacts of Structural Units in PDB entry:
8T06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T06 entry

There are 6 chains in PDB entry 8T06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLY 203
B
 VAL 5GLY 203
C
 GLN 1SER 120
D
 ASP 1LYS 107
E
 GLN 1SER 120
F
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8T06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
15 17Right-handed 310
Helix 3
AA3
A
18 28Right-handed alpha
Helix 4
AA4
A
30 52Right-handed alpha
Helix 5
AA5
A
62 86Right-handed alpha
Helix 6
AA6
A
89 111Right-handed alpha
Helix 7
AA7
A
115 141Right-handed alpha
Helix 8
AA8
A
146 153Right-handed alpha
Helix 9
AA9
A
153 170Right-handed alpha
Helix 10
AB1
A
171 174Right-handed 310
Helix 11
AB2
A
178 194Right-handed alpha
Helix 12
AB3
A
199 203Right-handed 310
Helix 13
AB4
B
6 14Right-handed alpha
Helix 14
AB5
B
15 17Right-handed 310
Helix 15
AB6
B
18 28Right-handed alpha
Helix 16
AB7
B
30 52Right-handed alpha
Helix 17
AB8
B
62 86Right-handed alpha
Helix 18
AB9
B
89 111Right-handed alpha
Helix 19
AC1
B
115 141Right-handed alpha
Helix 20
AC2
B
146 153Right-handed alpha
Helix 21
AC3
B
153 170Right-handed alpha
Helix 22
AC4
B
171 174Right-handed 310
Helix 23
AC5
B
178 194Right-handed alpha
Helix 24
AC6
B
199 203Right-handed 310
Helix 25
AC7
C
65 67Right-handed 310
Helix 26
AC8
C
88 91Right-handed 310
Helix 27
AC9
D
79 83Right-handed 310
Helix 28
AD1
E
65 67Right-handed 310
Helix 29
AD2
E
88 91Right-handed 310
Helix 30
AD3
F
79 83Right-handed 310
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There are 12 sheets in PDB entry 8T06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
79 84anti-parallel
Strand 4
C
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
114 118parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
35 42anti-parallel
Strand 5
C
48 54anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
114 118parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
109 110anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
62 66anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
102 107parallel
Strand 3
D
85 90anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 48anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
102 107parallel
Strand 3
D
85 90anti-parallel
Strand 4
D
97 98anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
79 84anti-parallel
Strand 4
E
69 74anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
114 118parallel
Strand 3
E
93 100anti-parallel
Strand 4
E
35 42anti-parallel
Strand 5
E
48 54anti-parallel
Strand 6
E
59 61anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
114 118parallel
Strand 3
E
93 100anti-parallel
Strand 4
E
109 110anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 6first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
70 75anti-parallel
Strand 4
F
62 66anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
102 107parallel
Strand 3
F
85 90anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
45 48anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
102 107parallel
Strand 3
F
85 90anti-parallel
Strand 4
F
97 98anti-parallel
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