Analysis of interatomic Contacts of Structural Units in PDB entry:
8T09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T09 entry

There are 2 chains in PDB entry 8T09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 420MET 730
B
 MET 1ARG 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8T09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 442Right-handed 310
Helix 2
AA2
A
443 450Right-handed alpha
Helix 3
AA3
A
454 459Right-handed alpha
Helix 4
AA4
A
479 486Right-handed alpha
Helix 5
AA5
A
486 495Right-handed alpha
Helix 6
AA6
A
498 502Right-handed 310
Helix 7
AA7
A
515 520Right-handed alpha
Helix 8
AA8
A
524 542Right-handed alpha
Helix 9
AA9
A
547 564Right-handed alpha
Helix 10
AB1
A
567 572Right-handed alpha
Helix 11
AB2
A
577 583Right-handed alpha
Helix 12
AB3
A
586 591Right-handed alpha
Helix 13
AB4
A
593 596Right-handed 310
Helix 14
AB5
A
597 611Right-handed alpha
Helix 15
AB6
A
617 631Right-handed alpha
Helix 16
AB7
A
714 729Right-handed alpha
Helix 17
AB8
B
15 26Right-handed alpha
Helix 18
AB9
B
68 75Right-handed alpha
Helix 19
AC1
B
86 105Right-handed alpha
Helix 20
AC2
B
120 124Right-handed 310
Helix 21
AC3
B
127 138Right-handed alpha
Helix 22
AC4
B
154 167Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8T09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 473first strand
Strand 2
A
461 466anti-parallel
Strand 3
A
505 510anti-parallel
Strand 4
A
421 425parallel
Strand 5
A
431 435anti-parallel
Strand 6
B
37 45anti-parallel
Strand 7
B
50 58anti-parallel
Strand 8
B
2 9parallel
Strand 9
B
77 83parallel
Strand 10
B
111 116parallel
Strand 11
B
142 145parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 646first strand
Strand 2
A
654 662anti-parallel
Strand 3
A
666 671anti-parallel
Strand 4
A
677 682anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 690first strand
Strand 2
A
696 701anti-parallel
Strand 3
A
706 711anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il